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Series GSE116515 Query DataSets for GSE116515
Status Public on Dec 31, 2018
Title The inner ear heat shock transcriptional signature identifies otoprotective compounds against aminoglycoside ototoxicity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA-Seq analysis of adult mouse cultured utricles exposed to 43C heat shock for 30 minutes and recovered for 2 hours in order to generate a heat shock signature for cultured mouse inner ear tissue
 
Overall design Utricles were dissected from P30-P60 CBA/J mice (male and female) and cultured, each RNASeq replicate contains 5-6 utricles pooled together
 
Contributor(s) Ryals MM, Morell RJ, Cunningham LL, Boger EW
Citation(s) 30532693
Submission date Jul 02, 2018
Last update date Nov 21, 2022
Contact name Robert Morell
E-mail(s) morellr@nidcd.nih.gov
Organization name National Institute on Deafness and Other Communication Disorders
Street address 35A Convent Drive, Room 1F-103
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (8)
GSM3242186 Control 1
GSM3242187 Control 2
GSM3242188 Control 3
Relations
BioProject PRJNA478914
SRA SRP151770

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116515_CPM_TMM_counts.txt.gz 1023.4 Kb (ftp)(http) TXT
GSE116515_RAW.tar 1.6 Mb (http)(custom) TAR (of TXT)
GSE116515_RawCountFile.txt.gz 420.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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