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Series GSE116571 Query DataSets for GSE116571
Status Public on Nov 29, 2019
Title Metabolic Alterations in JAK2 Mutant Hematopoietic Cells Represent Therapeutic Vulnerabilities for Myeloproliferative Neoplasms
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Increased energy requirement and metabolic reprograming is a hallmark of cancer cells. We found that mouse models of myeloproliferative neoplasms (MPN) expressing mutant JAK2 displayed systemic metabolic changes including hypoglycemia and adipose atrophy. Modulation of nutrient availability modified MPN manifestations and survival. Hypoglycemia in MPN mice correlated with hyperactive erythropoiesis and was due to a combination of elevated glycolysis and increased oxidative phosphorylation. Transcriptomic and metabolomic analyses together with functional assays in hematopoietic stem and progenitor cells identified vulnerable metabolic nodes for therapeutic targeting. Inhibition of Pfkfb3, a key regulatory enzyme of glycolysis, increased blood glucose levels, improved blood counts and reduced splenomegaly. We observed additive efficacy with ruxolitinib. Mechanistically, altered redox homeostasis promoted apoptosis of susceptible MPN cells.
 
Overall design Triplicates for each genotype
 
Contributor(s) Rao TN, Skoda RC
Citation(s) 31511238, 33667305, 36100613
https://doi.org/10.1182/blood.2020005563
Submission date Jul 03, 2018
Last update date Sep 27, 2022
Contact name DBM Bioinformatics Core Facility
Phone +41612073541
Organization name University of Basel
Department Departement of Biomedicine
Street address Hebelstrasse 20
City Basel
State/province BS
ZIP/Postal code 4053
Country Switzerland
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (9)
GSM3242997 MEP_VF_1
GSM3242998 MEP_VF_2
GSM3242999 MEP_VF_3
Relations
BioProject PRJNA479424
SRA SRP151856

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116571_gene_counts.tsv.gz 609.8 Kb (ftp)(http) TSV
GSE116571_gene_expression_levels.tsv.gz 1.2 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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