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Series GSE116805 Query DataSets for GSE116805
Status Public on Aug 01, 2018
Title ChIP-Chip tiling array for H3k27ac in mouse β-TC3 cells over panel of genes including Pax6, Sox2, Otx2, Sox9.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary Enhancer identification using H3k27ac ChIP-ChIP in mouse β-TC3 cells, using custom tilling array covering a 66 Mb region around Pax6 (Chr2:75,000,000-141,000,000) mm9.
Additional loci and regions, Sox2 (chr3:32,000,000-37,000,000), Otx2 (chr14:48,500,000-50,500,000), Rax (chr18:65,500,000-68,000,000), Hba a-globin (chr11:32,050,000-32,450,000), Six3 (chr17:85,200,000-86,700,000), Sox1 (chr8:11,800,000-12,800,000), Mab21L2 (chr3:85,850,000-86,850,000), Bmp4 (chr14:46,500,000-47,500,000), NeuroD1 (chr2:79,050,000-79,600,000), Prox1 (chr1:191,700,000-192,700,000), Hmx1 (chr5:34,700,000-36,200,000), H19-Igf2 (chr7:149500000-150500000), Sox9 (chr11:110000000-116000000).
 
Overall design Two biological replicates of β-TC3 H3K27ac ChIP hybridized versus input DNA.
 
Contributor(s) Buckle A, Nozawa R, Kleinjan DA, Gilbert N
Citation(s) 30007277
Submission date Jul 09, 2018
Last update date Oct 15, 2018
Contact name nick gilbert
E-mail(s) nick.gilbert@ed.ac.uk
Phone 00 44 131 651 8551
Organization name University of Edinburgh
Department MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine
Street address Crewe Rd
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Platforms (1)
GPL25306 NimbleGen 110505_AB_MM9_regions_ChIP tiling array
Samples (2)
GSM3262116 β-TC3 H3K27ac Rep1
GSM3262117 β-TC3 H3K27ac Rep2
Relations
BioProject PRJNA480273

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116805_BTC3_H3K27ac_2rep.bedgraph.gz 9.6 Mb (ftp)(http) BEDGRAPH
GSE116805_RAW.tar 93.1 Mb (http)(custom) TAR (of PAIR)
Processed data are available on Series record

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