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Status |
Public on Aug 01, 2018 |
Title |
ChIP-Chip tiling array for H3k27ac in mouse β-TC3 cells over panel of genes including Pax6, Sox2, Otx2, Sox9. |
Organism |
Mus musculus |
Experiment type |
Genome binding/occupancy profiling by genome tiling array
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Summary |
Enhancer identification using H3k27ac ChIP-ChIP in mouse β-TC3 cells, using custom tilling array covering a 66 Mb region around Pax6 (Chr2:75,000,000-141,000,000) mm9. Additional loci and regions, Sox2 (chr3:32,000,000-37,000,000), Otx2 (chr14:48,500,000-50,500,000), Rax (chr18:65,500,000-68,000,000), Hba a-globin (chr11:32,050,000-32,450,000), Six3 (chr17:85,200,000-86,700,000), Sox1 (chr8:11,800,000-12,800,000), Mab21L2 (chr3:85,850,000-86,850,000), Bmp4 (chr14:46,500,000-47,500,000), NeuroD1 (chr2:79,050,000-79,600,000), Prox1 (chr1:191,700,000-192,700,000), Hmx1 (chr5:34,700,000-36,200,000), H19-Igf2 (chr7:149500000-150500000), Sox9 (chr11:110000000-116000000).
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Overall design |
Two biological replicates of β-TC3 H3K27ac ChIP hybridized versus input DNA.
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Contributor(s) |
Buckle A, Nozawa R, Kleinjan DA, Gilbert N |
Citation(s) |
30007277 |
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Submission date |
Jul 09, 2018 |
Last update date |
Oct 15, 2018 |
Contact name |
nick gilbert |
E-mail(s) |
nick.gilbert@ed.ac.uk
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Phone |
00 44 131 651 8551
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Organization name |
University of Edinburgh
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Department |
MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine
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Street address |
Crewe Rd
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City |
Edinburgh |
ZIP/Postal code |
EH4 2XU |
Country |
United Kingdom |
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Platforms (1) |
GPL25306 |
NimbleGen 110505_AB_MM9_regions_ChIP tiling array |
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Samples (2) |
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Relations |
BioProject |
PRJNA480273 |
Supplementary file |
Size |
Download |
File type/resource |
GSE116805_BTC3_H3K27ac_2rep.bedgraph.gz |
9.6 Mb |
(ftp)(http) |
BEDGRAPH |
GSE116805_RAW.tar |
93.1 Mb |
(http)(custom) |
TAR (of PAIR) |
Processed data are available on Series record |
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