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Series GSE11736 Query DataSets for GSE11736
Status Public on Jun 16, 2008
Title Mutant analysis of C. elegans small RNAs, 5p-end-independent
Organism Caenorhabditis elegans
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary These datasets profile the expression of small RNAs with 3p hydroxyls (including endo-siRNAs, miRNAs, and 21U-RNAs) in young adult worms from the wt and prg-1 mutant backgrounds. They were prepared using an approach that captures small RNAs independent of the covalent status of their 5p termini, as described in Ambros et al. (2003) Curr Biol 13:807-18.
These datasets were prepared in the Craig C. Mello laboratory.

Keywords: endo-siRNA mutant expression profiling
 
Overall design CE-prg1-endoSiRNAs-Illumina
1 flowcell each for the wt and prg-1 mutant
 
Contributor(s) Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D, Luo S, Schroth GP, Carrington JC, Bartel DP, Mello CC
Citation(s) 18571452
Submission date Jun 10, 2008
Last update date Mar 19, 2012
Contact name James Graham Ruby
Organization name UCSF
Department Biochemistry
Lab DeRisi
Street address 1700 4th Street QB3 s404
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (1)
GPL6946 MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa)
Samples (2)
GSM297754 Adult (C)
GSM297755 Prg-1 mutant (C)
This SubSeries is part of SuperSeries:
GSE11738 High-throughput sequencing of small RNAs: Caenorhabditis elegans
Relations
BioProject PRJNA109171

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Supplementary data files not provided
Processed data included within Sample table

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