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Status |
Public on Jun 16, 2008 |
Title |
Mutant analysis of C. elegans small RNAs, 5p-end-independent |
Organism |
Caenorhabditis elegans |
Experiment type |
Non-coding RNA profiling by high throughput sequencing
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Summary |
These datasets profile the expression of small RNAs with 3p hydroxyls (including endo-siRNAs, miRNAs, and 21U-RNAs) in young adult worms from the wt and prg-1 mutant backgrounds. They were prepared using an approach that captures small RNAs independent of the covalent status of their 5p termini, as described in Ambros et al. (2003) Curr Biol 13:807-18. These datasets were prepared in the Craig C. Mello laboratory.
Keywords: endo-siRNA mutant expression profiling
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Overall design |
CE-prg1-endoSiRNAs-Illumina 1 flowcell each for the wt and prg-1 mutant
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Contributor(s) |
Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D, Luo S, Schroth GP, Carrington JC, Bartel DP, Mello CC |
Citation(s) |
18571452 |
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Submission date |
Jun 10, 2008 |
Last update date |
Mar 19, 2012 |
Contact name |
James Graham Ruby |
Organization name |
UCSF
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Department |
Biochemistry
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Lab |
DeRisi
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Street address |
1700 4th Street QB3 s404
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City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94158 |
Country |
USA |
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Platforms (1) |
GPL6946 |
MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) |
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Samples (2) |
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This SubSeries is part of SuperSeries: |
GSE11738 |
High-throughput sequencing of small RNAs: Caenorhabditis elegans |
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Relations |
BioProject |
PRJNA109171 |
Supplementary data files not provided |
Processed data included within Sample table |
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