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Series GSE117393 Query DataSets for GSE117393
Status Public on Jul 20, 2018
Title Comparative analysis of the root and leaf transcriptomes in Chelidonium majus L.
Organism Chelidonium majus
Experiment type Expression profiling by high throughput sequencing
Summary To understand the biosynthesis of C. majus BIAs, we performed de novo transcriptome sequencing of leaf and root tissues of C. majus using Illumina high-throughput sequencing technology.
 
Overall design Different tissues, including roots and leaves from Chelidonium majus were used for transcriptome sequencing using the Illumina HiSeq 2000 platform to generate paired-end (2×150 base) reads.
 
Contributor(s) Soorni A, Naghavi MR
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Submission date Jul 19, 2018
Last update date Jul 20, 2018
Contact name Aboozar Soorni
E-mail(s) aboozar.soorni@gmail.com
Organization name Isfahan University of Technology
Department Biotechnology
Street address Isfahan
City Isfahan
ZIP/Postal code 8415683111
Country Iran
 
Platforms (1)
GPL25353 Illumina HiSeq 2000 (Chelidonium majus)
Samples (4)
GSM3293738 CHMR2
GSM3293739 CHMR4
GSM3293740 CHML3
Relations
BioProject PRJNA481977
SRA SRP154460

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117393_BinPacker_ChID.fa.gz 35.5 Mb (ftp)(http) FA
GSE117393_BinPacker_trans.counts.matrix.gz 2.7 Mb (ftp)(http) MATRIX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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