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Series GSE117437 Query DataSets for GSE117437
Status Public on May 01, 2019
Title 10x Genonics Drop-seq single-cell RNA-seq of neonatal (P1.5) testis cells from mice treated with DMSO or Retinoic Acid.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To reveal distinct transcriptomes associated with response of neonatal prospermatogonia to retinoic acid (RA), unselected testis cells from animals treated with RA or DMSO were used for 10x Genomics analysis 12 hours after treatment at P1.
Overall design Unselected testis cells isolated from animals 12hr after treatment with DMSO or RA at midnight of P1 were used for this study. Two replicate experiments were performed using testes pooled from separate litters. Data are from a total of 34,153 cells.
Contributor(s) Hermann BP, Singh A, Roa-de-la-Cruz L, Velte EK, Geyer CB
Citation(s) 31023878
Submission date Jul 20, 2018
Last update date Jul 31, 2019
Contact name Brian P. Hermann
Phone 210-458-8047
Organization name University of Texas at San Antonio
Department Department of Biology
Street address 1 UTSA Circle
City San Antonio
State/province TX
ZIP/Postal code 78249
Country USA
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (4)
GSM3294749 P1-5_DMSO-Replicate1
GSM3294750 P1-5_DMSO-Replicate2
GSM3294751 P1-5_RA-Replicate1
BioProject PRJNA482113
SRA SRP154558

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117437_P1-5_DMSO-RA_aggregate_barcodes.tsv.gz 132.0 Kb (ftp)(http) TSV
GSE117437_P1-5_DMSO-RA_aggregate_filteredmatrix.mtx.gz 258.2 Mb (ftp)(http) MTX
GSE117437_P1-5_DMSO-RA_aggregate_genes.tsv.gz 212.5 Kb (ftp)(http) TSV
GSE117437_RAW.tar 265.5 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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