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| Status |
Public on Jul 24, 2019 |
| Title |
Mapping of low-salt soluble chromatin identifies known and novel transcriptionally active genes in chicken erythrocytes |
| Organism |
Gallus gallus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Transcriptional regulation is regulated by the organization of the genome into chromatin compartments and domains. Here, we present the detailed characteristics, including location of nucleosome-free regions, of several novel transcriptionally active/poised chromatin compartments exhibiting a range of transcriptional activities. These chromatin patterns illustrate how the salt solubility profile of a genomic region aids in the annotation of genes expressed in erythroid cells and contributes to the identification of functional features such as regulatory regions.
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| Overall design |
Examination of open chromatin regions in Chicken Immature erythrocyte cells.
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| Contributor(s) |
Jahan S, Beacon TH, Shihua H, Gonzalez C, Xu W, Delcuve GP, Davie JR |
| Citation(s) |
30858137 |
| |
| Submission date |
Jul 24, 2018 |
| Last update date |
Jan 16, 2023 |
| Contact name |
James Ronald Davie |
| E-mail(s) |
jim.davie@umanitoba.ca
|
| Phone |
2042723174
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| Organization name |
University of Manitoba
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| Department |
Biochemistry and Medical Genetics
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| Street address |
745 Bannatyne Avenue, RM 333A
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| City |
Winnipeg |
| State/province |
Manitoba |
| ZIP/Postal code |
R3E 0J9 |
| Country |
Canada |
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| Platforms (1) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA486785 |
| SRA |
SRP158397 |
