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Series GSE117828 Query DataSets for GSE117828
Status Public on Jul 28, 2018
Title Primary human monocytes either mock treated, infected with A/California/07/2009 and A/Victoria/361/2001
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary 241 genes differentially expressed between two viruses
 
Overall design Primary human monocytes were infected for 1 hour then primary autologous NK cells were added for a 6 or 23 hr co-coculture. Post co-culture, the monocytes and NK cells were re-isolated by magnetic separation, monocyte RNA was harvested via RNA bee and sent for RNA-sequencing.
 
Contributor(s) Kronstad L, Blish C
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 27, 2018
Last update date Mar 26, 2019
Contact name Lisa M Kronstad
E-mail(s) lmkronstad@gmail.com
Phone 5102893525
Organization name Stanford University
Department Medicine
Lab Blish
Street address S131 Grant Building
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (18)
GSM3309898 LK-1-CGATGT
GSM3309899 LK-2-TGACCA
GSM3309900 LK-3-ACAGTG
Relations
BioProject PRJNA483245
SRA SRP155573

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117828_DESeq2_Workflow.pdf 975.5 Kb (ftp)(http) PDF
GSE117828_Gene_Expression_Network_Analysis.pdf 1.4 Mb (ftp)(http) PDF
GSE117828_Transcription_of_Influenza_Strain.pdf 691.5 Kb (ftp)(http) PDF
GSE117828_counts_normalized_monocytes.csv.gz 2.2 Mb (ftp)(http) CSV
GSE117828_counts_unnormalized_monocytes.csv.gz 589.4 Kb (ftp)(http) CSV
GSE117828_treatment_H1N1_H3N2_tophat_results.csv.gz 1.0 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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