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| Status |
Public on Jul 31, 2018 |
| Title |
The miRNAs and their targets in cucumber shoot apexes in response to temperature and photoperiod environments |
| Organism |
Cucumis sativus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Other
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| Summary |
The cucumber is one of the most important vegetables worldwide and is used as a research model for study of phloem transport, sex determination and temperature-photoperiod physiology. The shoot apex is the most important plant tissue in which the cell fate and organ meristems have been determined. In this study, a series of whole-genome small RNA, degradome and transcriptome analyses were performed on cucumber shoot apical tissues treated with high vs. low temperature and a long vs. short photoperiod.
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| Overall design |
small RNAs and mRNAs were pyrosequenced from the shoot apical tissues of cucumber plants grown in four differential temperature-photoperiod treatments (16 h light at 28 °C /8 h dark at 25 °C, HL; 8 h light at 28 °C /16 h dark at 25 °C, HS; 16 h light at 20 °C /8 h dark at 15 °C, LL; 8 h light at 20 °C /16 h dark at 15 °C, LS). The 16 h/8 h and 8-h/16 h of light/dark photoperiods simulated long- and short-day seasons.Three replicates were perfermed on each treatment.
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| Contributor(s) |
Zhang X, Lai Y, Zhang W, Li X |
| Citation(s) |
30442111, 33613633 |
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| Submission date |
Jul 30, 2018 |
| Last update date |
Apr 07, 2021 |
| Contact name |
Xiaohui Zhang |
| E-mail(s) |
zhangxiaohui01@caas.cn
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| Phone |
86-10-82105947
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| Organization name |
Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science
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| Street address |
Zhong-Guan-Cun South Street 12
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| City |
Beijing |
| ZIP/Postal code |
100081 |
| Country |
China |
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| Platforms (1) |
| GPL16310 |
Illumina HiSeq 2000 (Cucumis sativus) |
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| Samples (25)
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| Relations |
| BioProject |
PRJNA483461 |
| SRA |
SRP155743 |
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