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Status |
Public on Jan 25, 2019 |
Title |
Transcriptome analysis of the oriental fruit fly Bactrocera dorsalis early embryos |
Organism |
Bactrocera dorsalis |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
We constructed three RNA libraries from embryos at 0-1, 2-4 and 5-8 post-oviposition (hpo) of Bactrocera dorsalis for deep sequencing. Using an Illumina HiSeq 2500 platform, we mapped more than 83, 85 and 98 million sequence reads from 0-1, 2-4 and 5-8 hour embryos respectively, and identified a total of 13,489 unigenes. 1683, 3201 and 3134 unigenes showed differential expression between the 0-1 and 2-4 hour embryos, the 0-1 and 5-8 hour embryos, and the 2-4 and 5-8 hour embryos respectively.
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Overall design |
RNA profiles from embryos at 0-1, 2-4 and 5-8 post-oviposition (hpo) of Bactrocera dorsalis were generated by Illumina deep sequencing.
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Contributor(s) |
Peng W, Zhang H |
Citation missing |
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Submission date |
Aug 13, 2018 |
Last update date |
Jan 25, 2019 |
Contact name |
Wei Peng |
E-mail(s) |
pengweijack@163.com
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Organization name |
Huazhong Agricultural University
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Street address |
Shizishan Street No. 1, Hongshan District, Wuhan,Hubei 430070, P.R. China
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City |
Wuhan |
ZIP/Postal code |
430070 |
Country |
China |
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Platforms (1) |
GPL21756 |
Illumina HiSeq 2500 (Bactrocera dorsalis) |
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Samples (3) |
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Relations |
BioProject |
PRJNA485742 |
SRA |
SRP157691 |
Supplementary file |
Size |
Download |
File type/resource |
GSE118472_FPKMs.txt.gz |
229.3 Kb |
(ftp)(http) |
TXT |
GSE118472_RAW.tar |
1.8 Mb |
(http)(custom) |
TAR (of XLSX) |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
Processed data are available on Series record |
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