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Series GSE118472 Query DataSets for GSE118472
Status Public on Jan 25, 2019
Title Transcriptome analysis of the oriental fruit fly Bactrocera dorsalis early embryos
Organism Bactrocera dorsalis
Experiment type Expression profiling by high throughput sequencing
Summary We constructed three RNA libraries from embryos at 0-1, 2-4 and 5-8 post-oviposition (hpo) of Bactrocera dorsalis for deep sequencing. Using an Illumina HiSeq 2500 platform, we mapped more than 83, 85 and 98 million sequence reads from 0-1, 2-4 and 5-8 hour embryos respectively, and identified a total of 13,489 unigenes. 1683, 3201 and 3134 unigenes showed differential expression between the 0-1 and 2-4 hour embryos, the 0-1 and 5-8 hour embryos, and the 2-4 and 5-8 hour embryos respectively.
 
Overall design RNA profiles from embryos at 0-1, 2-4 and 5-8 post-oviposition (hpo) of Bactrocera dorsalis were generated by Illumina deep sequencing.
 
Contributor(s) Peng W, Zhang H
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Submission date Aug 13, 2018
Last update date Jan 25, 2019
Contact name Wei Peng
E-mail(s) pengweijack@163.com
Organization name Huazhong Agricultural University
Street address Shizishan Street No. 1, Hongshan District, Wuhan,Hubei 430070, P.R. China
City Wuhan
ZIP/Postal code 430070
Country China
 
Platforms (1)
GPL21756 Illumina HiSeq 2500 (Bactrocera dorsalis)
Samples (3)
GSM3330635 0-1 hpo embryos
GSM3330636 2-4 hpo embryos
GSM3330637 5-8 hpo embryos
Relations
BioProject PRJNA485742
SRA SRP157691

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118472_FPKMs.txt.gz 229.3 Kb (ftp)(http) TXT
GSE118472_RAW.tar 1.8 Mb (http)(custom) TAR (of XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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