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Series GSE118569 Query DataSets for GSE118569
Status Public on Aug 16, 2018
Title A galling insect activates plant reproductive programs during gall development
Organism Vitis riparia
Experiment type Expression profiling by high throughput sequencing
Summary Some insects can redirect plant development to form unique organs called galls, which provide these insects with unique, enhanced food and protection from enemies and the elements. Many galls resemble flowers or fruits, suggesting that elements of reproductive development may be involved. We addressed this possibility using RNA sequencing (RNAseq) to quantify the transcriptional responses of wild grapevine (Vitis riparia Michx.) leaves to a galling parasite, phylloxera (Daktulosphaira vitifoliae (Fitch 1855)). If development of reproductive structures is part of gall formation, we expected to find significantly elevated expression of genes involved in flower and/or fruit development in developing galls as opposed to ungalled leaves. We found that reproductive gene ontology classes were significantly enriched in developing galls, and that expression of many putative genes involved in flower formation was significantly increased, particularly in later gall stages. The patterns of gene expression found in galls suggest that phylloxera exploits vascular cambium to provide meristematic tissue and redirects leaf development towards formation of carpels. The phylloxera leaf gall, and perhaps other similar galls, appears to be phenotypically and transcriptionally convergent on the plant carpel.
 
Overall design Comparison of 4 gall developmental stages (1-4) with 3 ungalled control leaves (small, medium, large)
 
Contributor(s) Schultz JC, Edger PP, Body MJ, Appel HM
Citation(s) 30755671
Submission date Aug 15, 2018
Last update date Feb 27, 2019
Contact name William G. Spollen
E-mail(s) spollenw@missouri.edu
Phone 573-884-8151
Organization name University of Missouri-Columbia
Department Informatics Research Core Facility
Lab Scott A. Givan
Street address 113 Bond Life Sciences Center
City Columbia
State/province MO
ZIP/Postal code 65211
Country USA
 
Platforms (1)
GPL24498 Illumina HiSeq 2000 (Vitis riparia)
Samples (27)
GSM3333339 Gall 1 - Biorep 1
GSM3333340 Gall 1 - Biorep 2
GSM3333341 Gall 1 - Biorep 3
Relations
BioProject PRJNA486136
SRA SRP157983

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118569_RPKM.txt.gz 2.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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