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| Status |
Public on Jul 01, 2008 |
| Title |
Bacillus subtilis 168 cells: wild-type vs. (ccpN-yqfL) double mutant |
| Platform organism |
Bacillus subtilis |
| Sample organism |
Bacillus subtilis subsp. subtilis str. 168 |
| Experiment type |
Expression profiling by array
|
| Summary |
Global transcriptional profiling of Bacillus subtilis cells comparing wild-type to a (ccpN-yqfL) double mutant.
Abstract of the associated publication (article accepted):
The transcriptional regulator CcpN of Bacillus subtilis has been recently characterized as a repressor of two gluconeogenic genes, gapB and pckA, and of a small non-coding regulatory RNA, sr1, involved in arginine catabolism. Deletion of ccpN impairs growth on glucose and strongly alters the distribution of intracellular fluxes, rerouting the main glucose catabolism from glycolysis to the pentose phosphate (PP) pathway. Using transcriptome analysis, we show that during growth on glucose, gapB and pckA are the only protein-coding genes directly repressed by CcpN. By quantifying intracellular fluxes in deletion mutants, we demonstrate that derepression of pckA under glycolytic condition causes the growth defect observed in the ccpN mutant due to extensive futile cycling through the pyruvate carboxylase, phosphoenolpyruvate carboxykinase, and pyruvate kinase. Beyond ATP dissipation via this cycle, PckA activity causes a drain on tricarboxylic acid cycle intermediates, which we show to be the main reason for the reduced growth of a ccpN mutant. The high flux through the PP pathway in the ccpN mutant is modulated by the flux through the alternative glyceraldehyde-3-phosphate dehydrogenases, GapA and GapB. Strongly increased concentrations of intermediates in upper glycolysis indicate that GapB overexpression causes a metabolic jamming of this pathway and, consequently, increases the relative flux through the PP pathway. In contrast, derepression of sr1, the third known target of CcpN, plays only a marginal role in ccpN mutant phenotypes.
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| Overall design |
Two-condition experiment: wt vs. (ccpN-yqfL) double mutant.
2 totally independent comparisons were performed different days with 2 independent RNA preparations and 2 sets of macroarrays.
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| Contributor(s) |
Tannler S, Fischer E, Le Coq D, Doan T, Jamet E, Sauer U, Aymerich S |
| Citation(s) |
18586936 |
| Submission date |
Jun 24, 2008 |
| Last update date |
Mar 19, 2012 |
| Contact name |
Thierry Doan |
| E-mail(s) |
thierry_doan@hms.harvard.edu
|
| Organization name |
INRA
|
| Department |
Microbiologie
|
| Lab |
Microbiologie et Genetique Moleculaire
|
| Street address |
INRA
|
| City |
Thiverval-Grignon |
| ZIP/Postal code |
78850 |
| Country |
France |
| |
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| Platforms (1) |
| GPL188 |
Sigma Genosys Panorama Bacillus subtilis Gene Array |
|
| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE11937 |
Bacillus subtilis 168 cells: ccpN mutant and ccpN-yqfL double mutant analysis |
|
| Relations |
| BioProject |
PRJNA109105 |
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