|
| Status |
Public on May 31, 2021 |
| Title |
Genome wide microRNA methylome in oral cancer: searching for biomarkers in tobacco users along with possible association with patient’s survival |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
We performed reduced representative bisulfite sequencing (RRBS) data on 16 pairs of tumor and adjacent normal tissues from oral squamous cell carcinoma patients to identify methylated biomarkers for disease identification
|
| |
|
| Overall design |
DMAP pipeline was used to compare methylation frequencies between cancer and paired normal tissues to get list of differentially methylated regions or DMR
|
| |
|
| Contributor(s) |
Roy B |
| Citation(s) |
30875235 |
| |
| Submission date |
Aug 23, 2018 |
| Last update date |
May 31, 2021 |
| Contact name |
BIDYUT ROY |
| E-mail(s) |
bidyutroy8933@gmail.com
|
| Phone |
9432076069
|
| Organization name |
indian statistical institute
|
| Department |
human genetics unit
|
| Street address |
203 bt road
|
| City |
Kolkata |
| State/province |
West bengal |
| ZIP/Postal code |
700108 |
| Country |
India |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (40)
|
|
| Relations |
| BioProject |
PRJNA487627 |
| SRA |
SRP158710 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE118991_S10_sig_mirna.txt.gz |
123.5 Kb |
(ftp)(http) |
TXT |
| GSE118991_S11_replicate_sig_mirna.txt.gz |
260.9 Kb |
(ftp)(http) |
TXT |
| GSE118991_S13_sig_mirna.txt.gz |
15.5 Kb |
(ftp)(http) |
TXT |
| GSE118991_S14_sig_mirna.txt.gz |
156.0 Kb |
(ftp)(http) |
TXT |
| GSE118991_S15_sig_mirna.txt.gz |
132.5 Kb |
(ftp)(http) |
TXT |
| GSE118991_S16_sig_mirna.txt.gz |
150.3 Kb |
(ftp)(http) |
TXT |
| GSE118991_S1_sig_mirna.txt.gz |
154.9 Kb |
(ftp)(http) |
TXT |
| GSE118991_S2_sig_mirna.txt.gz |
166.1 Kb |
(ftp)(http) |
TXT |
| GSE118991_S3_sig_mirna.txt.gz |
160.2 Kb |
(ftp)(http) |
TXT |
| GSE118991_S4_sig_mirna.txt.gz |
153.6 Kb |
(ftp)(http) |
TXT |
| GSE118991_S5_sig_mirna.txt.gz |
69.6 Kb |
(ftp)(http) |
TXT |
| GSE118991_S6_sig_mirna.txt.gz |
102.7 Kb |
(ftp)(http) |
TXT |
| GSE118991_S7_replicate_sig_mirna.txt.gz |
18.4 Kb |
(ftp)(http) |
TXT |
| GSE118991_S7_sig_mirna.txt.gz |
23.8 Kb |
(ftp)(http) |
TXT |
| GSE118991_S8_replicate_sig_mirna.txt.gz |
194.3 Kb |
(ftp)(http) |
TXT |
| GSE118991_S8_sig_mirna.txt.gz |
102.8 Kb |
(ftp)(http) |
TXT |
| GSE118991_S9_replicate_sig_mirna.txt.gz |
179.6 Kb |
(ftp)(http) |
TXT |
| GSE118991_S9_sig_mirna.txt.gz |
106.1 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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