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Series GSE119085 Query DataSets for GSE119085
Status Public on Aug 29, 2018
Title Mouse Boolean Implication Network
Sample organism Mus musculus
Experiment type Expression profiling by array
Third-party reanalysis
Summary Numerous gene expression datasets from diverse mouse tissue samples have been already deposited in the public domain. There have been several attempts to do large scale meta-analyses of all of these datasets. Most of these analyses summarize pairwise gene expression relationships using correlation, or identify differentially expressed genes in two conditions. We propose here a new large scale meta-analysis of all of the publicly available mouse datasets to identify Boolean logical relationships between genes. Boolean logic is a branch of mathematics that deals with two possible values. In the context of gene expression datasets we use qualitative high and low expression values. A strong logical relationship between genes emerges if at least one of the quadrants is sparsely populated.
Overall design 11,758 published mouse microarray samples assayed on the GPL1261 were re-analyzed. RMA was used to normalize the RAW CEL files all together.
Contributor(s) Sahoo D
Citation(s) 31091168, 32322218
Submission date Aug 27, 2018
Last update date Apr 27, 2020
Contact name Debashis Sahoo
Phone 6508624736
Organization name UCSD
Department Pediatrics
Lab Boolean
Street address 9500 Gillman Drive
City La Jolla
State/province California
ZIP/Postal code 92093
Country USA
This SubSeries is part of SuperSeries:
GSE119128 An unbiased Boolean analysis of public gene expression data for core cell cycle gene classification

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE119085_README.txt 2.3 Kb (ftp)(http) TXT
GSE119085_mouse-gpl1261-bv.txt.gz 78.9 Mb (ftp)(http) TXT
GSE119085_mouse-gpl1261-expr.txt.gz 1.9 Gb (ftp)(http) TXT
GSE119085_mouse-gpl1261-idx.txt.gz 974.4 Kb (ftp)(http) TXT
GSE119085_mouse-gpl1261-thr.txt.gz 1.2 Mb (ftp)(http) TXT
GSE119085_mouse_re-analyzed_Samples.txt.gz 27.9 Kb (ftp)(http) TXT
Processed data are available on Series record

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