|
| Status |
Public on Oct 01, 2018 |
| Title |
Chicken IRF7 knockout by CRISPR-Cas9 in DF-1 and in vitro H6N2 infection followed by RNA-seq |
| Organism |
Gallus gallus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To elucidate the functional role of chicken IRF7 against avian influenza virus (AIV) infection, we generated inducible IRF7 knockout DF-1 cell lines and performed in vitro infection using low pathogenic AIVs (LPAIVs) followed by RNA-seq.
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| |
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| Overall design |
Transcriptiome analysis of low pathogenic influenza virus (H6N2) infected chicken IRF7 knockout DF-1 cell lines and control cell line at different timeponts (0, 2, 6, 12hpi)
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| |
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| Contributor(s) |
Kim T, Kern C, Zhou H |
| Citation(s) |
32252379 |
| |
| Submission date |
Sep 06, 2018 |
| Last update date |
May 26, 2020 |
| Contact name |
Huaijun Zhou |
| E-mail(s) |
hzhou@ucdavis.edu
|
| Organization name |
UC Davis
|
| Street address |
Meyer 3307, One shields Ave.
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL23499 |
Illumina HiSeq 4000 (Gallus gallus) |
|
| Samples (24)
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|
| Relations |
| BioProject |
PRJNA489671 |
| SRA |
SRP159870 |
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