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| Status |
Public on Aug 13, 2019 |
| Title |
RNA degradomes reveal substrates and importance for dark and nitrogen stress responses of Arabidopsis XRN4 |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Application of Parallel Analysis of RNA Ends (PARE), an RNA degradome approach to identify substrates of Arabidopsis XRN4. The xrn4 mutants overaccumulate decay intermediates from multiple mRNA turnover pathways.
This material is based on work supported by the National Science Foundation [under Grant Numbers MCB1021636 and MCB1817764 to P.J.G.]
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| Overall design |
Examination of polyA+ and polyA- profiles in WT and xrn4 mutants of Arabidopsis, using PARE and RNA-seq
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| |
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| Contributor(s) |
Nagarajan VK, Green PJ |
| Citation(s) |
31428786 |
| |
| Submission date |
Sep 10, 2018 |
| Last update date |
Oct 01, 2019 |
| Contact name |
Pamela J Green |
| E-mail(s) |
green@dbi.udel.edu
|
| Organization name |
Delaware Biotechnology Institute
|
| Department |
Plant and Soil Sciences
|
| Street address |
15 Innovation Way
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| City |
Newark |
| State/province |
DE |
| ZIP/Postal code |
19711 |
| Country |
USA |
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| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (22)
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| Relations |
| BioProject |
PRJNA490087 |
| SRA |
SRP160880 |
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