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| Status |
Public on Jul 13, 2020 |
| Title |
Transcriptome profile of RCS chondrocyte wt cell line and RCS chondrocyte obtained from a clone ko for the FGF receptors FGFR3 and FGFR4 |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To understand the transcriptomic effect of FGF18 treatment on Chondrocytes cells from wt rat and on Chondrocytes obtained from a clone ko for the FGF receptors FGFR3 and FGFR4, we performed Quant-seq experiments. Both cell lines were treated with Fibroblast growth factor 18 (FGF18), while untreated cells were used as control.
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| Overall design |
total RNA was extracted from Both cell lines treated with Fibroblast growth factor 18 (FGF18), while RNA extracted from untreated cells was used as control.
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| Contributor(s) |
De Cegli R, Cinque L |
| Citation(s) |
32716134 |
| Submission date |
Sep 26, 2018 |
| Last update date |
Sep 08, 2020 |
| Contact name |
Rossella De Cegli |
| E-mail(s) |
decegli@tigem.it
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| Phone |
08119230692
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| Organization name |
Tigem
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| Street address |
Via Campi Flegrei 34
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| City |
Pozzuoli |
| ZIP/Postal code |
80078 |
| Country |
Italy |
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| Platforms (1) |
| GPL20084 |
Illumina NextSeq 500 (Rattus norvegicus) |
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| Samples (12)
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| GSM3402439 |
Chondrocytes from RCS wt cells untreated, biological rep1 |
| GSM3402440 |
Chondrocytes from RCS wt cells untreated, biological rep2 |
| GSM3402441 |
Chondrocytes from RCS wt cells untreated, biological rep3 |
| GSM3402442 |
Chondrocytes from RCS wt cells treated with FGF18, biological rep1 |
| GSM3402443 |
Chondrocytes from RCS wt cells treated with FGF18, biological rep2 |
| GSM3402444 |
Chondrocytes from RCS wt cells treated with FGF18, biological rep3 |
| GSM3402445 |
Chondrocytess from RCS cells ko for the FGF receptors FGFR3 and FGFR4, untreated, biological rep1 |
| GSM3402446 |
Chondrocytess from RCS cells ko for the FGF receptors FGFR3 and FGFR4, untreated, biological rep2 |
| GSM3402447 |
Chondrocytess from RCS cells ko for the FGF receptors FGFR3 and FGFR4, untreated, biological rep3 |
| GSM3402448 |
Chondrocytess from RCS cells ko for the FGF receptors FGFR3 and FGFR4, treated with FGF18, biological rep1 |
| GSM3402449 |
Chondrocytess from RCS cells ko for the FGF receptors FGFR3 and FGFR4, treated with FGF18, biological rep2 |
| GSM3402450 |
Chondrocytess from RCS cells ko for the FGF receptors FGFR3 and FGFR4, treated with FGF18, biological rep3 |
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| Relations |
| BioProject |
PRJNA493251 |
| SRA |
SRP162676 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE120516_RAW.tar |
1.4 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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