 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 12, 2008 |
| Title |
siRNAs 15-29 nucleotides long with 100 percent hit to Turnip mosaic virus clone GBR98 |
| Organism |
Turnip mosaic virus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Mustard (Brassica juncea) was tested for Turnip mosaic virus infection. Small RNA of the plant was extracted and converted to DNA according to Ho, T., et al. (2006) Journal of Virological Methods 136:217-223, with primers modified to contain 454 adapter nucleotide sequences. The DNA then passed quality control through Bioanalyzer and Nanodrop before sequenced by 454 Life Sciences.
Keywords: siRNA
|
| |
|
| Overall design |
One sample analyzed by 454 high-throughput sequencing technology
|
| |
|
| Contributor(s) |
Ho T, Wang H |
| Citation |
Nucleotide bias of DCL and AGO in plant anti-virus gene silencing. Thien Ho, Liang Wang, Linfeng Huang, Zhigang Li, Denise W. Pallett, Tamas Dalmay, Kazusato Ohshima, John A. Walsh and Hui Wang, Protein Cell 2010, 1(9): 847–858, DOI 10.1007/s13238-010-0100-4
|
| |
| Submission date |
Jul 09, 2008 |
| Last update date |
Jun 11, 2013 |
| Contact name |
Thien Xuan Ho |
| URL |
http://www.ceh.ac.uk
|
| Organization name |
CEH Oxford
|
| Street address |
Mansfield road
|
| City |
Oxford |
| ZIP/Postal code |
OX1 3SR |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL9383 |
454 GS (Turnip mosaic virus) |
|
| Samples (1) |
|
| Relations |
| BioProject |
PRJNA113381 |
| Supplementary data files not provided |
| Raw data not provided for this record |
| Processed data included within Sample table |
|
|
|
|
 |
