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| Status |
Public on Nov 04, 2020 |
| Title |
TREE1-EIN3 mediated transcriptional repression inhibits shoot growth in the response to ethylene |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Third-party reanalysis
|
| Summary |
Purpose: Next-generation sequencing (NGS) has been used to study the gene expression in different samples under air and ethylene treatment. The goal of this study is to uncover how TREE1 repress expression of genes that bound by transcriptional activitor EIN3 after ethylene treatment.
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| Overall design |
Seedling mRNA profiles of 3-day old TREE1ox (in COL background) were generated by sequencing, in 2 replications, using Illumina HiSeq 2000
Wildtype control samples were re-analyzed samples: GSM2209777 and GSM2209778.
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| |
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| Contributor(s) |
Qiao H, Wang L |
| Citation(s) |
33139535 |
| Submission date |
Sep 28, 2018 |
| Last update date |
Nov 04, 2020 |
| Contact name |
Hong Qiao |
| Organization name |
The University of Texas at Austin
|
| Department |
Department of Molecular Biosciences
|
| Lab |
Qiao lab
|
| Street address |
2506 speedway, NMS5.324
|
| City |
Austin |
| State/province |
TEXAS |
| ZIP/Postal code |
78731 |
| Country |
USA |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (2) |
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| Relations |
| Reanalysis of |
GSM2209777 |
| Reanalysis of |
GSM2209778 |
| BioProject |
PRJNA493855 |
| SRA |
SRP162882 |
