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GEO accession:
Series GSE120887
Query DataSets for GSE120887
Status
Public on Oct 06, 2018
Title
Inherent DNA binding specificities of the HIF-1α and HIF-2α transcription factors in chromatin
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30429208
,
31822727
,
31690629
Submission date
Oct 05, 2018
Last update date
Apr 13, 2020
Contact name
David Robert Mole
E-mail(s)
david.mole@ndm.ox.ac.uk
Phone
0044 (0)1865 613956
Organization name
University of Oxford
Department
Nuffield Department of Medicine
Lab
NDM Research Building
Street address
Roosevelt Drive, Headington
City
Oxford
ZIP/Postal code
OX3 7FZ
Country
United Kingdom
Platforms (1)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (84)
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More...
GSM3417778
HKC8_0.5_6hr_HIF1a_rep1
GSM3417779
HKC8_0.5_6hr_HIF1a_rep2
GSM3417780
HKC8_0.5_6hr_HIF2a_rep1
GSM3417781
HKC8_0.5_6hr_HIF2a_rep2
GSM3417782
HKC8_0.5_6hr_HIF1b_rep1
GSM3417783
HKC8_0.5_6hr_HIF1b_rep2
GSM3417784
HKC8_0.5_6hr_input
GSM3417785
HKC8_0.5_16hr_HIF1a_rep1
GSM3417786
HKC8_0.5_16hr_HIF1a_rep2
GSM3417787
HKC8_0.5_16hr_HIF2a_rep1
GSM3417788
HKC8_0.5_16hr_HIF2a_rep2
GSM3417789
HKC8_0.5_16hr_HIF1b_rep1
GSM3417790
HKC8_0.5_16hr_HIF1b_rep2
GSM3417791
HKC8_0.5_16hr_input
GSM3417792
HKC8_0.5_48hr_HIF1a_rep1
GSM3417793
HKC8_0.5_48hr_HIF1a_rep2
GSM3417794
HKC8_0.5_48hr_HIF2a_rep1
GSM3417795
HKC8_0.5_48hr_HIF2a_rep2
GSM3417796
HKC8_0.5_48hr_HIF1b_rep1
GSM3417797
HKC8_0.5_48hr_HIF1b_rep2
GSM3417798
HKC8_0.5_48hr_input
GSM3417799
HKC8_3_6hr_HIF1a_rep1
GSM3417800
HKC8_3_6hr_HIF1a_rep2
GSM3417801
HKC8_3_6hr_HIF2a_rep1
GSM3417802
HKC8_3_6hr_HIF2a_rep2
GSM3417803
HKC8_3_6hr_HIF1b_rep1
GSM3417804
HKC8_3_6hr_HIF1b_rep2
GSM3417805
HKC8_3_6hr_input
GSM3417806
S01_WTInput(1)
GSM3417807
S02_1aKOInput(1)
GSM3417808
S03_2aKOInput(1)
GSM3417809
S04_WTInput(2)
GSM3417810
S05_1aKOInput(2)
GSM3417811
S06_2aKOInput(2)
GSM3417812
S07_WT-1bChIP(1)
GSM3417813
S08_WT-1aChIP(1)
GSM3417814
S09_WT-2aChIP(1)
GSM3417815
S10_1aKO-1bChIP(1)
GSM3417816
S11_1aKO-2aChIP(1)
GSM3417817
S12_2aKO-1bChIP(1)
GSM3417818
S13_2aKO-1aChIP(1)
GSM3417819
S14_WT-1bChIP(2)
GSM3417820
S15_WT-1aChIP(2)
GSM3417821
S16_WT-2aChIP(2)
GSM3417822
S17_1aKO-1bChIP(2)
GSM3417823
S18_1aKO-2aChIP(2)
GSM3417824
S19_2aKO-1bChIP(2)
GSM3417825
S20_2aKO-1aChIP(2)
GSM3417826
RCC4_Normoxia_HIF-1a (PM14)_Rep 1
GSM3417827
RCC4_Normoxia_HIF-1a (PM14)_Rep 2
GSM3417828
RCC4_Normoxia_HIF-2a (PM9)_Rep 1
GSM3417829
RCC4_Normoxia_HIF-2a (PM9)_Rep 2
GSM3417830
RCC4_Normoxia_Input_Rep 1
GSM3417831
RCC4_Normoxia_Input_Rep 2
GSM3417832
RCC4_Normoxia_HIF1b (Novus NB-100-110) repeat 2
GSM3417833
RCC4_Normoxia_HIF1b (Novus NB-100-110) repeat 3
GSM3417834
RCC4_Normoxia_INPUT repeat 2
GSM3417835
RCC4_Normoxia_INPUT repeat 3
GSM3417836
HepG2_16hrs 0.5% O2_Input_Rep 1
GSM3417837
HepG2_16hrs 0.5% O2_Input_Rep 2
GSM3417838
HepG2_16hrs 0.5% O2_HIF-1b (Novus NB100-110)_Rep 1
GSM3417839
HepG2_16hrs 0.5% O2_HIF-1b (Novus NB100-110)_Rep 2
GSM3417840
HepG2_16hrs 0.5% O2_HIF-1a (PM14)_Rep 1
GSM3417841
HepG2_16hrs 0.5% O2_HIF-1a (PM14)_Rep 2
GSM3417842
HepG2_16hrs 0.5% O2_HIF-2a (PM9)_Rep 1
GSM3417843
HepG2_16hrs 0.5% O2_HIF-2a (PM9)_Rep 2
GSM3417844
HKC-8Normoxia21O2rep1
GSM3417845
HKC-8Normoxia21O2rep2
GSM3417846
HKC-8Normoxia21O2rep3
GSM3417847
HKC8Hypoxia0.1O2rep1
GSM3417848
HKC8Hypoxia0.1O2rep2
GSM3417849
HKC8Hypoxia0.1O2rep3
GSM3417850
RCC4_VHL_Nx_1_Replacement
GSM3417851
RCC4_VHL_Nx_2_Replacement
GSM3417852
RCC4_VHL_Nx_3_Replacement
GSM3417853
RCC4_VHL_Hx_1_Replacement
GSM3417854
RCC4_VHL_Hx_2_Replacement
GSM3417855
RCC4_VHL_Hx_3_Replacement
GSM3417856
HepG2_Normoxia_NA_Rep 1
GSM3417857
HepG2_Normoxia_NA_Rep 2
GSM3417858
HepG2_Normoxia_NA_Rep 3
GSM3417859
HepG2_16hrs 0.5% O2_NA_Rep 1
GSM3417860
HepG2_16hrs 0.5% O2_NA_Rep 2
GSM3417861
HepG2_16hrs 0.5% O2_NA_Rep 3
This SuperSeries is composed of the following SubSeries:
GSE120885
Inherent DNA binding specificities of the HIF-1α and HIF-2α transcription factors in chromatin (ChIP-seq)
GSE120886
Inherent DNA binding specificities of the HIF-1α and HIF-2α transcription factors in chromatin (RNA-seq)
Relations
BioProject
PRJNA494827
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE120887_RAW.tar
12.3 Gb
(http)
(custom)
TAR (of BED, BIGWIG, TXT)
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