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| Status |
Public on May 25, 2019 |
| Title |
RNA sequencing of pole-containing anterior tip regions in planarian Schmidtea mediterranea |
| Organism |
Schmidtea mediterranea |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA sequencing identified new anterior-pole enriched genes encoding transcription factors, a secreted protein, and a transmembrane protein, including NR4A, a nuclear receptor gene that is important in patterning the planarian head and tail.
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| Overall design |
RNA sequencing was performed on pole-containing anterior tip regions and their flanking regions in uninjured animals and regenerating animals 72-hours after transverse amputation, and gene expression of pole-containing regions was compared against that of flanking regions to identify genes differentially expressed in pole regions.
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| |
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| Contributor(s) |
Li DJ, McMann CL, Reddien PW |
| Citation(s) |
31025936 |
| |
| Submission date |
Oct 10, 2018 |
| Last update date |
May 25, 2019 |
| Contact name |
Peter W Reddien |
| Organization name |
Whitehead Institute for Biomedical Research
|
| Street address |
9 Cambridge Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL15553 |
Illumina HiSeq 2000 (Schmidtea mediterranea) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE121048 |
RNA sequencing studies in planarian Schmidtea mediterranea |
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| Relations |
| BioProject |
PRJNA495461 |
| SRA |
SRP164884 |
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