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| Status |
Public on May 25, 2019 |
| Title |
RNA sequencing of single cells from the midline posterior extremity in planarian Schmidtea mediterranea |
| Organism |
Schmidtea mediterranea |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA sequencing of single cells from the midline posterior tip of the tail and posterior blastema in planarian Schmidtea mediterranea identified new posterior-pole enriched genes
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| Overall design |
RNA sequencing was performed on wnt1+ and wnt- single muscle cells (collagen+) from the midline tail tips in uninjured animals and the midline posterior blastemas in regenerating animals 72-hours after transverse amputation, and gene expression of posterior pole cells (wnt1+; collagen+) was compared with that of non-posterior pole muscle cells (wnt1-; collagen+) to identify genes differentially expressed in the posterior pole.
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| |
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| Contributor(s) |
Li DJ, McMann CL, Reddien PW |
| Citation(s) |
31025936 |
| |
| Submission date |
Oct 10, 2018 |
| Last update date |
May 25, 2019 |
| Contact name |
Peter W Reddien |
| Organization name |
Whitehead Institute for Biomedical Research
|
| Street address |
9 Cambridge Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL15553 |
Illumina HiSeq 2000 (Schmidtea mediterranea) |
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| Samples (152)
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| This SubSeries is part of SuperSeries: |
| GSE121048 |
RNA sequencing studies in planarian Schmidtea mediterranea |
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| Relations |
| BioProject |
PRJNA495464 |
| SRA |
SRP164886 |
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