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Series GSE121108 Query DataSets for GSE121108
Status Public on Oct 01, 2021
Title Gene expression analysis on Naïve CD4 T cell with JMJD3 knockdown
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report that knocking down JMJD3 in human naïve CD4 T cells impedes the induction of T cell activation related genes and cell cycle related genes.
 
Overall design Human naïve CD4 T cells were isolated from periphery blood of healthy donors. Cells were transfected with siRNA knocking down JMJD3 (siJMJD3) or control siRNA (scrambled) by electroporation. 16 hours after electroporation, cells were activated by CD3/CD28 beads for 8 hours and collected for RNA purification.
 
Contributor(s) Meng X
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 11, 2018
Last update date Oct 01, 2021
Contact name Xiangzhi Meng
E-mail(s) mengxiangzhi919@gmail.com
Organization name The University of Hong Kong
Street address 21 Sassoon Road
City Hong Kong SAR
ZIP/Postal code 000000
Country Hong Kong
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM3426292 scrambled_donor1
GSM3426293 scrambled_donor2
GSM3426294 scrambled_donor3
Relations
BioProject PRJNA495740
SRA SRP165158

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121108_Differential_expressed_genes_in_siJMJD3_T8.txt.gz 23.0 Kb (ftp)(http) TXT
GSE121108_raw_read_counts.txt.gz 2.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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