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| Status |
Public on Jun 21, 2019 |
| Title |
Distinct chromatin signitures of promoters, enhancers and transposons in allohexaploid wheat |
| Organism |
Triticum aestivum |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Bread wheat is allohexaploid with 16 Gb genome, which has large intergenic region with abundant TEs and regulatory sequences . Our results give insight into the connections between chromatin modifications and transcriptional regulatory activity and provide the first systematic epigenomic map for functional annotation of the allohexaploid wheat genome.
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| Overall design |
We integrated seven major chromatin marks, DNA methylome and open chromatin, along with transcriptomic data in allohexaploid wheat to systematically characterize distinct chromatin archetectures surrounding regulatory elements including promoters, enhancers and transposons.
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| Contributor(s) |
Zhang Y |
| Citation(s) |
31307500, 37985755 |
| |
| Submission date |
Oct 29, 2018 |
| Last update date |
Dec 07, 2023 |
| Contact name |
yijing zhang |
| E-mail(s) |
zhangyijing@fudan.edu.cn
|
| Organization name |
Fudan University
|
| Department |
Biochemistry
|
| Lab |
Functional Epigenomics Group
|
| Street address |
2005 Songhu Road
|
| City |
shanghai |
| ZIP/Postal code |
200438 |
| Country |
China |
| |
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| Platforms (1) |
| GPL24354 |
Illumina HiSeq 3000 (Triticum aestivum) |
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| Samples (18)
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| This SubSeries is part of SuperSeries: |
| GSE178372 |
Distinct chromatin signatures and transcriptional landscape of functional genetic elements in allohexaploid wheat |
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| Relations |
| BioProject |
PRJNA499014 |
| SRA |
SRP167092 |
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