|
| Status |
Public on Nov 06, 2018 |
| Title |
Identification of common highly expressed genes of Salmonella Enteritidis by in silico prediction of gene expression and in vitro transcriptomic analysis |
| Organism |
Salmonella enterica subsp. enterica serovar Enteritidis |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report the use of RNA-Seq technique to identify common highly expressed genes in pathogenic poultry-associated field strains of S. Enteritidis grown in LB-salt broth (300mM NaCl) and low-phosphate/low -magnesium/low-pH LPM broth at avian body temperature (42°C).
|
| |
|
| Overall design |
Characterization and comparison of transcriptome of three S. Enteritidis strains previously identified as high-pathogenic
|
| |
|
| Contributor(s) |
Shah DH, Chiok KR |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Nov 05, 2018 |
| Last update date |
Nov 07, 2018 |
| Contact name |
Devendra H Shah |
| E-mail(s) |
dshah@wsu.edu
|
| Phone |
509-335-6071
|
| Organization name |
Washington State University
|
| Department |
Veterinary Microbiology and Pathology
|
| Lab |
Shah Lab
|
| Street address |
#402, Bustad Hall
|
| City |
Pullman |
| State/province |
Washington |
| ZIP/Postal code |
99163 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17074 |
Illumina HiSeq 2000 (Salmonella enterica subsp. enterica serovar Enteritidis) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA503872 |
| SRA |
SRP167878 |
Less...
More...