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Series GSE122939 Query DataSets for GSE122939
Status Public on Mar 19, 2019
Title AP-1cFos/JunB/miR-200a regulate the pro-regenerative glial cell response during axolotl spinal cord regeneration
Organism Ambystoma mexicanum
Experiment type Expression profiling by high throughput sequencing
Summary Salamanders have the remarkable ability to functionally regenerate after spinal cord transection. In response to injury, GFAP+ glial cells in the axolotl spinal cord proliferate and migrate to replace the missing neural tube and create a permissive environment for axon regeneration. Molecular pathways that regulate the pro-regenerative axolotl glial cell response are poorly understood. Here we show axolotl glial cells up-regulate AP-1cFos/JunB after injury, which promotes a pro-regenerative glial cell response. Axolotl glial cells directly repress c-Jun expression via up-regulation of miR-200a. Inhibition of miR-200a during regeneration causes defects in axonal regrowth and transcriptomic analysis revealed that miR-200a inhibition leads to differential regulation of genes involved with reactive gliosis, the glial scar, ECM remodeling and axon guidance. This work identifies a novel role for miR-200a in inhibiting reactive gliosis in glial cell in axolotl during spinal cord regeneration
 
Overall design All axolotls used in these experiments were bred in the axolotl facility at the University of Minnesota or at the MBL under the IACUC protocols #1710-35242A, #18-49. Axolotls of 2–3 cm were used for all in vivo experiments, and animals were kept in separate containers and fed daily with artemia; water was changed daily. Animals were anesthetized in 0.01% p-amino benzocaine (Sigma) before microinjection was performed.
 
Contributor(s) Sabin K, Jiang P, Gearhart M, Stewart R, Echeverri K
Citation(s) 30854483
Submission date Nov 26, 2018
Last update date Mar 19, 2019
Contact name Karen Echeverri
E-mail(s) kecheverri@mbl.edu
Organization name MARINE BIOLOGICAL LAB
Department Eugene Bell Center for Regeneration Biology and Tissue Engineering
Lab Echeverri Lab
Street address 7 MBL ST
City Woods hole
State/province MA
ZIP/Postal code 02543
Country USA
 
Platforms (1)
GPL22800 Illumina HiSeq 2500 (Ambystoma mexicanum)
Samples (12)
GSM3488929 Cntl_Uninj_1_S1
GSM3488930 Uninj_RNA_S2
GSM3488931 Uninj_Cntl_5_S3
Relations
BioProject PRJNA506973
SRA SRP170730

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Supplementary file Size Download File type/resource
GSE122939_Axolotl_TPM_all_samples_version_1_.xlsx 2.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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