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Series GSE123629 Query DataSets for GSE123629
Status Public on Feb 13, 2019
Title Nr4a transcription factors limit CAR-T cell function in solid tumors [ATAC-Seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Chromatin accessibility with ATAC-seq and gene expression with RNA-seq for CD8 T cells expressing chimeric antigen receptors in solid tumors or after in vitro culture.
 
Overall design ATAC-seq: 70 new samples and 21 re-analyzed samples from GSE88987
 
Contributor(s) Scott-Browne J, Chen J
Citation(s) 30814732
Submission date Dec 11, 2018
Last update date Mar 21, 2019
Contact name James Scott-Browne
E-mail(s) scottbrownej@njhealth.org
Organization name National Jewish Health
Street address 1400 Jackson St, K806
City Denver
State/province Colorado
ZIP/Postal code 80206
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (91)
GSM3508270 Nr4a3KO CAR-T cells rep1 tr1 (atac-seq)
GSM3508271 Nr4a3KO CAR-T cells rep1 tr2 (atac-seq)
GSM3508272 Nr4a3KO CAR-T cells rep2 (atac-seq)
This SubSeries is part of SuperSeries:
GSE123739 Nr4a transcription factors limit CAR-T cell function in solid tumors
Relations
BioProject PRJNA509426
SRA SRP173275

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123629_ATACdensity.tsv.gz 18.8 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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