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Series GSE123629 Query DataSets for GSE123629
Status Public on Feb 13, 2019
Title Nr4a transcription factors limit CAR-T cell function in solid tumors [ATAC-Seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Chromatin accessibility with ATAC-seq and gene expression with RNA-seq for CD8 T cells expressing chimeric antigen receptors in solid tumors or after in vitro culture.
Overall design ATAC-seq: 70 new samples and 21 re-analyzed samples from GSE88987
Contributor(s) Scott-Browne J, Chen J
Citation(s) 30814732
Submission date Dec 11, 2018
Last update date Mar 21, 2019
Contact name James Scott-Browne
Organization name National Jewish Health
Street address 1400 Jackson St, K806
City Denver
State/province Colorado
ZIP/Postal code 80206
Country USA
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (91)
GSM3508270 Nr4a3KO CAR-T cells rep1 tr1 (atac-seq)
GSM3508271 Nr4a3KO CAR-T cells rep1 tr2 (atac-seq)
GSM3508272 Nr4a3KO CAR-T cells rep2 (atac-seq)
This SubSeries is part of SuperSeries:
GSE123739 Nr4a transcription factors limit CAR-T cell function in solid tumors
BioProject PRJNA509426
SRA SRP173275

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123629_ATACdensity.tsv.gz 18.8 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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