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Series GSE124125 Query DataSets for GSE124125
Status Public on Apr 02, 2019
Title Mesenchymal niche-specific expression of Cxcl12 controls quiescence of treatment-resistant leukemia stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In this study, we show that targeted deletion of CXCL12 from mesenchymal stromal cells (MSC) reduces normal HSC numbers, but in contrast expands murine LSC numbers by increasing self-renewing cell divisions, related to enhanced EZH2 activity. CML development leads to emergence of abnormal niches of MSC and LSC clusters that are lost upon CXCL12 deletion. Importantly, CXCL12 deletion from MSC also increases LSC elimination by TKI treatment. These studies reveal a critical role for CXCL12-expressing MSC niches in maintaining a population of quiescent, TKI-resistant LSC, and support targeting of these niche interactions to enhance LSC elimination.
 
Overall design LTHSC were sorted from the bone marrow of Cre-negative (No Cre), Tek-Cre, and Prx1-Cre mice directly into RLT buffer and RNA prepared, with four biological replicates from each group.
 
Contributor(s) Agarwal P, Bhatia R
Citation(s) 30905620
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 CA172447 Microenvironmental Regulation of Leukemia Stem Cells UNIVERSITY OF ALABAMA AT BIRMINGHAM RAVI BHATIA
Submission date Dec 19, 2018
Last update date Apr 02, 2019
Contact name Ravi Bhatia
E-mail(s) rbhatia1@uab.edu
Phone (205)934-9591
Organization name University of Alabama at Birmingham
Department Hematology/Oncology
Lab Ravi Bhatia Lab
Street address 1824 6th Avenue South
City Birmingham
State/province Alabama
ZIP/Postal code 35294
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM3521223 No_Cre_LTHSC-1
GSM3521224 No_Cre_LTHSC-2
GSM3521225 No_Cre_LTHSC-3
Relations
BioProject PRJNA510808
SRA SRP173944

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124125_CXCL12_raw_counts.xlsx 2.8 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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