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Series GSE124719 Query DataSets for GSE124719
Status Public on Jan 06, 2020
Title Gene expression signatures in blood and muscle biopsy after intramuscular immunization of healthy adult humans with adjuvanted vaccines (BIOVACSAFE protocol 305E)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The gene expression in whole blood and simultaneous muscle biopsy (site of immunization and control contralateral non-injected leg) was measured in healthy adult male humans attending a research unit (CRC, University of Surrey, UK), who were randomized to receive a single immunization with an adjuvanted licensed vaccine or saline placebo control.
 
Overall design Participants, all males, were randomized into the following groups (characteristics: treatment) to receive one of the following vaccines: FENDRIXE: intramuscular AS04C-alum-adjuvanted Fendrix, Hepatitis B (rDNA) vaccine (adjuvanted, adsorbed) supplied as a 0.5 mL suspension pre-filled syringe as a booster dose given to participants who were hepatitis B seropositive as a result of previous HBV immunization but negative for markers of HBV infection; FLUADE: intramuscular Fluad, MF59C-adjuvanted subunit vaccine supplied as a 0.5 ml pre-filled syringe containing influenza virus; PLACEBOE: intramuscular 0.5 mL normal saline. Participants attended on day 0 when pre-immunization baseline blood samples were drawn and vaccine or saline placebo intramuscularly administered into the anterolateral thigh of a designated leg (characteristics: injected side). The contralateral leg was not injected. The depth and angle of the injection was standardised and the injection site marked. Participants were randomized into groups (n = 5 per group) to undergo muscle biopsy and simultaneous blood draw on one of the following time points: 3 hours after immunization on day 0, days 1, 3, 5 or 7. For convenience a characteristics: hour value has been calculated for each array but this is only accurate at 0 and 3 hours, participants being free to attend at any time during the morning of the designated biopsy day after day 0. All whole blood samples were collected into PaxGene tubes. Muscle biopsies were obtained using an Abrahams suction / cutting needle under local anaesthetic. The needle was engraved at the same depth as the vaccine/placebo injection to facilitate accurate location of the injection site. A second biopsy was obtained from the same anatomical site in the contralateral non-injected control leg. Comments by the operator on the biopsy, quality, size, blood or adipose tissue presence have been included (characteristics: biopsy comments). A biopsy from the non-injected control leg was inadequate for RNA extraction in participant CRC305E9042 and so no array data are present. Biopsies were placed immediately into RNAlater for storage at 4°C overnight before freezing at -20°C and shipping on dry ice to the processing centre.
 
Contributor(s) Weiner J, Maertzdorf J, Lewis D
Citation(s) 33613536
Submission date Jan 07, 2019
Last update date Apr 07, 2021
Contact name David Lewis
E-mail(s) djmlewis@hotmail.com
Organization name Imperial College London
Department ICRF
Street address Du Cane Road
City London
ZIP/Postal code W12 0NN
Country United Kingdom
 
Platforms (1)
GPL21272 Agilent-048908 8x60K whole genome incl V1-V2 linc BioVacSafe final 048908 [Feature Number version]
Samples (179)
GSM3543875 muscle_notimmunized_CRC305E9064_3h
GSM3543876 muscle_immunized_CRC305E9064_3h
GSM3543877 muscle_immunized_CRC305E9042_24h
Relations
BioProject PRJNA513261

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124719_RAW.tar 2.1 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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