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Series GSE125019 Query DataSets for GSE125019
Status Public on Jan 12, 2022
Title Gene expression signatures after immunisation with an HIV-1 recombinant Vesicular Stomatitis Virus (VSV) vaccine following three priming doses of IL-12 pDNA enhanced HIV-1 multi-antigen pDNA vaccine (BIOVACSAFE protocol HVTN087)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The time course of whole blood gene expression was measured after the fourth immunisation at month 6 in participants who had been randomised into vaccine or placebo group 1 of the clinical protocol HVTN087 - A phase 1 trial to evaluate the safety, tolerability, and immunogenicity of an IL-12 pDNA enhanced HIV-1 multi-antigen pDNA vaccine delivered intramuscularly with electroporation, with an HIV-1 rVSV vaccine boost, in healthy HIV-uninfected adult participants (NCT01578889).
 
Overall design A pre-immunisation baseline sample was drawn prior to the fourth immunisation at month 6 (designated day 0) and further samples collected on days 1, 3, 7 and 14 after the immunisation. All samples were collected into PaxGene tubes. On day 0 participants received either: an intramuscular rVSVHIVGAG vaccine; intramuscular saline placebo; or in two cases no injection (treatment = VSVHIVGAG / PLACEBO / NONE respectively). Participants had previously received either three intramuscular placebo injections, or three intramuscular priming doses of IL-12 pDNA enhanced HIV-1 multi-antigen pDNA vaccine by electroporation at months 0, 1 and 3. Participants in group = 1 received all three DNA primes plus the booster VSVHIVGAG vaccine (vaccinations received = DDDV); whereas those in groups 1A, 1B, 1D and 1E had experienced some protocol deviations in that they missed one or more DNA primes or the VSV vaccination, indicated by - in vaccinations received characteristic (vaccinations received = DDD- / DD-V / D-DV / D--- respectively).
 
Contributor(s) Weiner J, Maertzdorf J, Lewis D
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Submission date Jan 13, 2019
Last update date Jan 13, 2022
Contact name David Lewis
E-mail(s) djmlewis@hotmail.com
Organization name Imperial College London
Department ICRF
Street address Du Cane Road
City London
ZIP/Postal code W12 0NN
Country United Kingdom
 
Platforms (1)
GPL21272 Agilent-048908 8x60K whole genome incl V1-V2 linc BioVacSafe final 048908 [Feature Number version]
Samples (108)
GSM3561209 WholeBlood_HVTN087123520169_Day0
GSM3561210 WholeBlood_HVTN087123520169_Day1
GSM3561211 WholeBlood_HVTN087123520169_Day3
Relations
BioProject PRJNA514931

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125019_RAW.tar 1.3 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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