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Series GSE12528 Query DataSets for GSE12528
Status Public on Jun 11, 2009
Title Wheat "Chinese Spring" natural antisense transcription survey
Organism Triticum aestivum
Experiment type Expression profiling by array
Summary The Affymetrix GeneChip Wheat Genome Array currently provides the most comprehensive coverage of the wheat genome for a microarray. In addition to using this resource for transcript expression studies and hybridization-based DNA marker discovery, we endeavored to use the GeneChip to discover the expression of natural antisense transcript (NAT) pairs. By using alternative target preparation schemes, both the sense- and antisense-strand derived transcripts were labeled and hybridized to the Wheat GeneChip. To enable maximum discovery, five different tissue types were selected for assay, and the wheat cultivar ‘Chinese Spring’ was used considering that most of the GeneChip probe sequences were based on sequencing of this genome. [PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Tristan Coram. The equivalent experiment is TA21 at PLEXdb.]
 
Overall design target strand labeled: Sense(1-replications); target strand labeled: Antisense(1-replications)
Web link http://www.plexdb.org/modules/PD_browse/experiment_browser.php?experiment=TA21
 
Contributor(s) Coram T
Citation(s) 19480707
Submission date Aug 22, 2008
Last update date Dec 04, 2018
Contact name PLEXdb Curator, Sudhansu Dash
Organization name Iowa State University
Department Virtual Reality Application Center
Lab PLEXdb
Street address 1023 Crop Genomes Informatics Lab (Iowa State University)
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Platforms (1)
GPL3802 [wheat] Affymetrix Wheat Genome Array
Samples (2)
GSM315202 target strand labeled: Sense - rep1
GSM315203 target strand labeled: Antisense - rep1
Relations
BioProject PRJNA112935

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12528_RAW.tar 8.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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