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Series GSE125466 Query DataSets for GSE125466
Status Public on Sep 23, 2020
Title RNA-sequencing analysis of genetically identical female and male Daphnia magna with age
Organism Daphnia magna
Experiment type Expression profiling by high throughput sequencing
Summary Comparison of female and male Daphnia magna gene expression with age. The sexes in Daphnia magna are genetically identical. The aim of this study was to identify possible differences in gene expression between genders with age.
 
Overall design RNA was extracted from samples with approximately equivalent dry mass using RNeasy Micro Kit (Qiagen Ltd, UK). The RNA-seq libraries were prepared using the Illumina TruSeq standard mRNA kit and sequenced (2x100bp) using Illumina Hi-Seq 4000 platform at BGI, Denmark.
 
Contributor(s) Constantinou J, Kvist J, Mirbahai L
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Submission date Jan 22, 2019
Last update date Sep 23, 2020
Contact name julia constantinou
E-mail(s) JKC335@student.bham.ac.uk
Phone +441214143933
Organization name University of Birmingham
Department Biosciences
Street address Edgebaston
City Birmingham
ZIP/Postal code B15 2TT
Country United Kingdom
 
Platforms (1)
GPL24325 Illumina HiSeq 4000 (Daphnia magna)
Samples (80)
GSM3574612 A1_Female_55_days
GSM3574613 A2_Female_55_days
GSM3574614 A3_Female_55_days
Relations
BioProject PRJNA516443
SRA SRP181187

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125466_RSeq_results_age_only_age_in_days_ordered_by_padj.csv.gz 1.2 Mb (ftp)(http) CSV
GSE125466_RSeq_results_sex-age_interaction_age_in_days_ordered_by_padj.csv.gz 1.2 Mb (ftp)(http) CSV
GSE125466_RSeq_results_sex_only_age_in_days_ordered_by_padj.csv.gz 1.2 Mb (ftp)(http) CSV
GSE125466_readcounts_combined.csv.gz 2.3 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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