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GEO accession:
Series GSE127196
Query DataSets for GSE127196
Status
Public on Jun 06, 2021
Title
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34385432
Submission date
Feb 26, 2019
Last update date
Aug 24, 2021
Contact name
Hua-Jun Wu
E-mail(s)
hjwu@pku.edu.cn
Organization name
Peking University Health Science Center
Department
School of Basic Medical Sciences
Lab
Center for Precision Medicine Multi-Omics Research
Street address
8 science park road, zhongguancun life science park
City
Beijing
State/province
Beijing
ZIP/Postal code
102206
Country
China
Platforms (1)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (81)
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GSM3630109
RNA-seq_D0_WT_p36_Rep1
GSM3630110
RNA-seq_D0_WT_p36_Rep2
GSM3630111
RNA-seq_D0_WT_p36_Rep3
GSM3630112
RNA-seq_D0_CTCF_p42_Rep1
GSM3630113
RNA-seq_D0_CTCF_p42_Rep2
GSM3630114
RNA-seq_D0_CTCF_p42_Rep3
GSM3630115
RNA-seq_D5_WT_p36_Rep1
GSM3630116
RNA-seq_D5_WT_p36_Rep2
GSM3630117
RNA-seq_D5_WT_p36_Rep3
GSM3630118
RNA-seq_D5_WT_p40_CXCR4_neg_Rep1
GSM3630119
RNA-seq_D5_WT_p40_CXCR4_neg_Rep2
GSM3630120
RNA-seq_D5_WT_p40_CXCR4_neg_Rep3
GSM3630121
RNA-seq_D5_WT_p40_CXCR4_pos_Rep1
GSM3630122
RNA-seq_D5_WT_p40_CXCR4_pos_Rep2
GSM3630123
RNA-seq_D5_WT_p40_CXCR4_pos_Rep3
GSM3630124
RNA-seq_D5_CTCF_p44_CXCR4_neg_Rep1
GSM3630125
RNA-seq_D5_CTCF_p44_CXCR4_neg_Rep2
GSM3630126
RNA-seq_D5_CTCF_p44_CXCR4_neg_Rep3
GSM3630127
RNA-seq_D5_CTCF_p44_CXCR4_pos_Rep1
GSM3630128
RNA-seq_D5_CTCF_p44_CXCR4_pos_Rep2
GSM3630129
RNA-seq_D5_CTCF_p44_CXCR4_pos_Rep3
GSM3630130
WT_undiff_ND23660834_ongene_Rep1
GSM3630131
WT_undiff_ND23660834_ongene_Rep2
GSM3630132
WT_undiff_ND23660834_ongene_Rep3
GSM3630133
WT_undiff_ND23658528_onDMR_Rep1
GSM3630134
WT_undiff_ND23658528_onDMR_Rep2
GSM3630135
WT_undiff_ND23658528_onDMR_Rep3
GSM3630136
KO_undiff_ND23660834_ongene_Rep1
GSM3630137
KO_undiff_ND23660834_ongene_Rep2
GSM3630138
KO_undiff_ND23660834_ongene_Rep3
GSM3630139
KO_undiff_ND23658528_onDMR_Rep1
GSM3630140
KO_undiff_ND23658528_onDMR_Rep2
GSM3630141
KO_undiff_ND23658528_onDMR_Rep3
GSM3731615
HuES64_HIC2035_MboI
GSM3731616
HuES64_HIC2147_MseI
GSM3731617
HuES64_HIC2699_MboI
GSM3731618
HuES64_HIC2699_MboI_Rep
GSM3731619
HuES64_dEC_HIC1964_MseI
GSM3731620
HuES64_dEC_HIC1964_MseI_Rep
GSM3731621
HuES64_dEC_HIC1968_MseI
GSM3731622
HuES64_dEC_HIC2036_MboI
GSM3731623
HuES64_dEC_HIC2036_MboI_Rep
GSM3731624
HuES64_dEC_HIC2694_MboI
GSM3731625
HuES64_dEC_HIC2697_MboI
GSM3731626
HuES64_dEN_HIC1969_MseI
GSM3731627
HuES64_dEN_HIC2647_MboI
GSM3731628
HuES64_dMS_HIC1959_MboI
GSM3731629
HuES64_dMS_HIC1960_MboI
GSM3731630
HuES64_dMS_HIC1961_MseI
GSM3731631
HuES64_dMS_HIC2649_MboI
GSM5031728
D0_CTCFbKO_DDSOX17_Rep1
GSM5031729
D0_CTCFbKO_DDSOX17_Rep2
GSM5031730
D0_CTCFbKO_DDSOX17_Rep3
GSM5031731
D5_CTCFbKO_DDSOX17-S_CXCR4-_Rep1
GSM5031732
D5_CTCFbKO_DDSOX17-S_CXCR4+_Rep1
GSM5031733
D5_CTCFbKO_DDSOX17+S_CXCR4-_Rep1
GSM5031734
D5_CTCFbKO_DDSOX17+S_CXCR4+_Rep1
GSM5031735
D5_CTCFbKO_DDSOX17-S_CXCR4-_Rep2
GSM5031736
D5_CTCFbKO_DDSOX17-S_CXCR4+_Rep2
GSM5031737
D5_CTCFbKO_DDSOX17+S_CXCR4-_Rep2
GSM5031738
D5_CTCFbKO_DDSOX17+S_CXCR4+_Rep2
GSM5031739
D5_CTCFbKO_DDSOX17-S_CXCR4-_Rep3
GSM5031740
D5_CTCFbKO_DDSOX17-S_CXCR4+_Rep3
GSM5031741
D5_CTCFbKO_DDSOX17+S_CXCR4-_Rep3
GSM5031742
D5_CTCFbKO_DDSOX17+S_CXCR4+_Rep3
GSM5032462
KO_D0_iPS_Rep1
GSM5032463
KO_D0_iPS_Rep2
GSM5032464
KO_D0_iPS_Rep3
GSM5032465
KO_D0_iPS_Rep4
GSM5032466
KO_D5_dEN_Rep1
GSM5032467
KO_D5_dEN_Rep2
GSM5032468
KO_D5_dEN_Rep3
GSM5032469
KO_D5_dEN_Rep4
GSM5032470
WT_D0_iPS_Rep1
GSM5032471
WT_D0_iPS_Rep2
GSM5032472
WT_D0_iPS_Rep3
GSM5032473
WT_D0_iPS_Rep4
GSM5032474
WT_D5_dEN_Rep1
GSM5032475
WT_D5_dEN_Rep2
GSM5032476
WT_D5_dEN_Rep3
GSM5032477
WT_D5_dEN_Rep4
This SuperSeries is composed of the following SubSeries:
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GSE127194
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes [RNA-seq]
GSE127195
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes [4C-seq]
GSE130085
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes [HiC]
GSE165339
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes [RNA-seq II]
GSE165375
Topological isolation as a mechanism for precise control of developmental regulators in mammalian genomes (Hi-C II)
Relations
BioProject
PRJNA524324
Download family
Format
SOFT formatted family file(s)
SOFT
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TXT
Supplementary file
Size
Download
File type/resource
GSE127196_RAW.tar
416.8 Mb
(http)
(custom)
TAR (of BEDGRAPH, H5, TXT)
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