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GEO accession:
Series GSE128662
Query DataSets for GSE128662
Status
Public on Oct 08, 2019
Title
Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31587991
,
32362324
Submission date
Mar 21, 2019
Last update date
May 05, 2020
Contact name
Christopher K Glass
E-mail(s)
ckg@ucsd.edu
Organization name
University of California, San Diego
Department
School of Medicine
Street address
9500 Gilman Drive
City
La Jolla
State/province
CA
ZIP/Postal code
92093
Country
USA
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
Samples (161)
Less...
More...
GSM3681776
MONOctr_8
GSM3681777
MONOctr_3
GSM3681778
MONOctr_6a10
GSM3681779
MONOctr_pool
GSM3681780
RLM012h_1035
GSM3681781
RLM012h_481
GSM3681782
RLM024h_161
GSM3681783
RLM024h_106
GSM3681784
RLM024h_151
GSM3681785
RLM048h_159
GSM3681786
RLM048h_153
GSM3681787
RLM072h_32
GSM3681788
RLM072h_41
GSM3681789
RLM168h_570
GSM3681790
RLM168h_571
GSM3681791
RLM168h_568
GSM3681792
RLM336h_567
GSM3681793
RLM336h_566
GSM3681794
RLM336h_565
GSM3681795
KCctr_31
GSM3681796
KCctr_164
GSM3681797
KCctr_166
GSM3681798
lxrCTR_cleNtimP_rep1
GSM3681799
lxrCTR_cleNtimP_rep2
GSM3681800
lxrKO_clePtimN_rep1
GSM3681801
lxrKO_clePtimN_rep2
GSM3681802
lxrKO_clePtimP_rep1
GSM3681803
lxrKO_clePtimP_rep2
GSM3681804
lxrCTR_BMDM_rep1
GSM3681805
lxrCTR_BMDM_rep2
GSM3681806
lxrKO_BMDM_rep1
GSM3681807
lxrKO_BMDM_rep2
GSM3681808
Stab2Low_210
GSM3681809
Stab2Low_317
GSM3681810
Stab2Int_210
GSM3681811
Stab2Int_317
GSM3681812
Stab2Hig_210
GSM3681813
Stab2Hig_317
GSM3681814
smadCTRt4_AT
GSM3681815
smadCTRt4_CA
GSM3681816
smadKOt4p_716
GSM3681817
smadKOt4p_CG
GSM3681818
smadKOt4p_GC
GSM3681819
smadKOt4n_716
GSM3681820
smadKOt4n_TT
GSM3681821
BMDMctrNotx_rep1
GSM3681822
BMDMctrNotx_rep2
GSM3681823
BMDMctrTgfb_rep1
GSM3681824
BMDMctrTgfb_rep2
GSM3681825
BMDMctrDll4_rep1
GSM3681826
BMDMctrDll4_rep2
GSM3681827
BMDMctrDll4Dapt_rep1
GSM3681828
BMDMctrDll4Dapt_rep2
GSM3681829
BMDMctrDll4Tgfb_rep1
GSM3681830
BMDMctrDll4Tgfb_rep2
GSM3681831
BMDMsmad4KONotx_rep1
GSM3681832
BMDMsmad4KONotx_rep2
GSM3681833
BMDMsmad4KOTgfb_rep1
GSM3681834
BMDMsmad4KOTgfb_rep2
GSM3681835
BMDMsmad4KODll4_rep1
GSM3681836
BMDMsmad4KODll4_rep2
GSM3681837
BMDMsmad4KODll4Dapt_rep1
GSM3681838
BMDMsmad4KODll4Dapt_rep2
GSM3681839
BMDMsmad4KODll4Tgfb_rep1
GSM3681840
BMDMsmad4KODll4Tgfb_rep2
GSM3681841
BMDMnotx24h_rep1
GSM3681842
BMDMnotx24h_rep2
GSM3681843
BMDMdll424h_rep1
GSM3681844
BMDMdll424h_rep2
GSM3681845
BMDMdmhca_24h_rep1
GSM3681846
BMDMdmhca_24h_rep2
GSM3681847
BMDMdll4Tgfb24h_rep1
GSM3681848
BMDMdll4Tgfb24h_rep2
GSM3681849
BMDMdll4TgfbDmhca24h_rep1
GSM3681850
BMDMdll4TgfbDmhca24h_rep2
GSM3681851
BMDMnotx72h_rep1
GSM3681852
BMDMnotx72h_rep2
GSM3681853
BMDMdll472h_rep1
GSM3681854
BMDMdll472h_rep2
GSM3681855
BMDMdll4Tgfb72h_rep1
GSM3681856
BMDMdll4Tgfb72h_rep2
GSM3681857
BMDMdll4TgfbDmhca72h_rep1
GSM3681858
BMDMdll4TgfbDmhca72h_rep2
GSM3681859
ChIP_H3K27ac_BloodLy6cHi_notx_rep1
GSM3681860
ChIP_H3K27ac_BloodLy6cHi_notx_rep2
GSM3681861
ChIP_H3K27ac_RLM_DT24h_rep1
GSM3681862
ChIP_H3K27ac_RLM_DT24h_rep2
GSM3681863
ChIP_H3K27ac_KC_notx_rep1
GSM3681864
ChIP_H3K27ac_KC_notx_rep2
GSM3681865
ChIP_LXR_KC_notx_rep1
GSM3681866
ChIP_LXR_KC_notx_rep2
GSM3681867
ChIP_input_LXR_KC_notx_rep1
GSM3681868
ChIP_input_LXR_KC_notx_rep2
GSM3681869
ChIP_LXR_BMDM_GW3965_rep1
GSM3681870
ChIP_LXR_BMDM_GW3965_rep2
GSM3681871
ChIP_input_LXR_BMDM_GW3965_rep1
GSM3681872
ChIP_input_LXR_BMDM_GW3965_rep2
GSM3681873
ChIP_SMAD4_KcNuclei_notx_rep1
GSM3681874
ChIP_SMAD4_KcNuclei_notx_rep2
GSM3681875
ChIP_input_SMAD4_KcNuclei_notx_rep1
GSM3681876
ChIP_input_SMAD4_KcNuclei_notx_rep2
GSM3681877
ChIP_SMAD4_BMDM_notx_rep1
GSM3681878
ChIP_SMAD4_BMDM_notx_rep2
GSM3681879
ChIP_input_SMAD4_BMDM_notx_rep1
GSM3681880
ChIP_input_SMAD4_BMDM_notx_rep2
GSM3681881
ChIP_RBPJ_KcNuclei_notx_rep1
GSM3681882
ChIP_RBPJ_KcNuclei_notx_rep2
GSM3681883
ChIP_input_RBPJ_KcNuclei_notx_rep1
GSM3681884
ChIP_input_RBPJ_KcNuclei_notx_rep2
GSM3681885
ChIP_RBPJ_BMDM_notx_rep1
GSM3681886
ChIP_RBPJ_BMDM_notx_rep2
GSM3681887
ChIP_input_RBPJ_BMDM_notx_rep1
GSM3681888
ChIP_input_RBPJ_BMDM_notx_rep2
GSM3681889
ChIP_H3K27ac_BMDM_notx_rep1
GSM3681890
ChIP_H3K27ac_BMDM_notx_rep2
GSM3681891
ChIP_H3K27ac_BMDM_DLL4_rep1
GSM3681892
ChIP_H3K27ac_BMDM_DLL4_rep2
GSM3681894
BloodLy6cHi_mouse8_ATAC_notx
GSM3681895
BloodLy6cHi_mouse3_ATAC_notx
GSM3681896
RLM_mouse58_ATAC_DT24h
GSM3681897
RLM_mouse215_ATAC_DT24h
GSM3681898
RLM_mouse106_ATAC_DT24h
GSM3681899
RLM_mouse212_ATAC_DT48h
GSM3681900
RLM_mouse195_ATAC_DT48h
GSM3681901
KC_mouse60_ATAC_PBS
GSM3681902
KC_mouse216_ATAC_PBS
GSM3681903
KcClecNegTim4Pos_ATAC_NoTx_Control_rep1
GSM3681904
KcClecNegTim4Pos_ATAC_NoTx_Control_rep2
GSM3681905
KcClecPosTim4Neg_ATAC_NoTx_KO_rep1
GSM3681906
KcClecPosTim4Neg_ATAC_NoTx_KO_rep2
GSM3681907
KcClecPosTim4Pos_ATAC_NoTx_KO_rep1
GSM3681909
KcClecPosTim4Pos_ATAC_NoTx_KO_rep2
GSM3681910
Smad4KO_KC_ATAC_NoTx_366
GSM3681913
Smad4KO_KC_ATAC_NoTx_382
GSM3681915
Control_KC_ATAC_NoTx_381
GSM3681917
Control_KC_ATAC_NoTx_383
GSM3681919
BMDM_ATAC_NoTx_24h_rep1
GSM3681921
BMDM_ATAC_NoTx_24h_rep2
GSM3681923
BMDM_ATAC_DLL4_24h_rep1
GSM3681926
BMDM_ATAC_DLL4_24h_rep2
GSM4059993
LY411575_Ctrl_rep1
GSM4059994
LY411575_Ctrl_rep2
GSM4059995
LY411575_Tx_rep1
GSM4059996
LY411575_Tx_rep2
GSM4059997
LY411575_Tx_rep3
GSM4059998
Dll1Ab_Ctrl_rep1
GSM4059999
Dll1Ab_Ctrl_rep2
GSM4060000
Dll1Ab_Tx_rep1
GSM4060001
Dll1Ab_Tx_rep2
GSM4060002
Dll1Ab_Tx_rep3
GSM4060003
Dll1Ab_Tx_rep4
GSM4060004
BMmono_NoTx_rep1
GSM4060005
BMmono_NoTx_rep2
GSM4060006
BMmono_Dll4_rep1
GSM4060007
BMmono_Dll4_rep2
GSM4060008
BMmono_Des_rep1
GSM4060009
BMmono_Des_rep2
GSM4060010
BMmono_Dll4Tgfb_rep1
GSM4060011
BMmono_Dll4Tgfb_rep2
GSM4060012
BMmono_Dll4TgfbDes_rep1
GSM4060013
BMmono_Dll4TgfbDes_rep2
This SuperSeries is composed of the following SubSeries:
GSE128657
Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (RNA-Seq)
GSE128658
Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (ChIP-Seq)
GSE128659
Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (ATAC-Seq)
Relations
BioProject
PRJNA528430
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Format
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TXT
Supplementary file
Size
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File type/resource
GSE128662_RAW.tar
34.5 Mb
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