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Series GSE128821 Query DataSets for GSE128821
Status Public on Mar 26, 2019
Title Epigenome-wide analyis of neurobehavioral variation in preterm infants
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Neonatal molecular biomarkers of neurobehavioral responses (measures of brain-behavior relationships), when combined with neurobehavioral performance measures, could lead to better predictions of long-term developmental outcomes. To this end, we examined whether variability in epigenomic measures from buccal cells were associated with neurobehavioral profiles in a cohort of infants born less than 30 weeks postmenstrual age (PMA) and participating in the Neonatal Neurobehavior and Outcomes in Very Preterm Infants (NOVI) Study (N=536). We tested whether epigenetic age, age acceleration, or DNA methylation (DNAm) levels at individual loci, measured via the Illumina EPIC microarray, differed between infants based on their NICU Network Neurobehavioral Scale (NNNS) profile classifications, ranging from most optimal to atypical. We adjusted for recruitment site, infant sex, PMA, and tissue heterogeneity. Infants with an optimally well-regulated NNNS profile had older epigenetic age compared to other NOVI infants (β1 = 0.201, p-value = 0.026), but no significant difference in age acceleration. In contrast, infants with an atypical NNNS profile had differential methylation at 29 CpG sites (FDR < 10%). Some of the genes annotated to these CpGs included PLA2G4E, TRIM9, GRIK3, and MACROD2, which have previously been associated with neurological structure and function, or with neurobehavioral disorders. These findings contribute to the existing evidence that neonatal epigenetic variations in buccal cells may be informative for infant neurobehavior.
 
Overall design DNA methylation was assessed for 542 samples using the Illumina MethylationEPIC Beadarray

**Additional samples (537-542) are added and the 'MatrixProcessed.txt.gz' is updated on Feb 18, 2021.
 
Contributor(s) Marsit CJ, Everson TM
Citation(s) 31004082, 33076993, 34507616, 37983304, 38418845, 38358663, 38482639
Submission date Mar 25, 2019
Last update date Jun 26, 2024
Contact name Carmen Marsit
E-mail(s) Carmen.J.Marsit@emory.edu
Organization name Rollins School of Public Health at Emory University
Department Environmental Health
Street address 1518 Clifton Road
City Atlanta
State/province GA
ZIP/Postal code 30322
Country USA
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (542)
GSM3685933 buccal swab 1 [201557530009_R01C01]
GSM3685934 buccal swab 2 [201557530008_R08C01]
GSM3685935 buccal swab 3 [201557530004_R01C01]
Relations
BioProject PRJNA528967

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128821_MatrixProcessed.txt.gz 2.9 Gb (ftp)(http) TXT
GSE128821_MatrixSignalIntensities.txt.gz 3.1 Gb (ftp)(http) TXT
GSE128821_RAW.tar 7.4 Gb (http)(custom) TAR (of IDAT)
Processed data are available on Series record

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