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Series GSE128966 Query DataSets for GSE128966
Status Public on Mar 31, 2023
Title Transcriptomic analysis of photoperiod regulated dormancy induction in grapevine.
Organism Vitis
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptomics study of F2 siblings with different dormancy responsiveness due to photoperiod subjected to long day and short day. F2 040 and F2 110 genotypes were previously described as part of a larger F2 population (Fennell et al., 2005, Acta Hort 689:533-539). The F2 040 and 110 genotypes exhibit photoperiod responsive characteristics similar to the Seyval and V. riparia grandparent, respectively (Fennell et al., 2015, doi: 10.3389/fpls.2015.00834)
 
Overall design Spur-pruned grapevines were grown under long days until shoots reached 12-15 nodes and then randomized into a continued long (LD, 15 h) or short photoperiod (13 h) for 28 or 42 days (George et al. 2018, J.Prot:187:13-24). Buds were harvested from nodes 3 to 12 on the shoot at 28 or 42 days of LD or SD. Three replications (10 vines per replicate) were harvested for each photoperiod treatment.
 
Contributor(s) Swaminathan P, Fennell AY
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 28, 2019
Last update date Mar 31, 2023
Contact name Anne Fennell
E-mail(s) anne.fennell@sdstate.edu
Phone 605-688-6373
Organization name South Dakota State University
Department Plant Science
Street address 1390 College Ave
City Brookings
State/province SD
ZIP/Postal code 57007
Country USA
 
Platforms (1)
GPL26359 Illumina HiSeq 2000 (Vitis)
Samples (24)
GSM3689241 f2_040_28L1
GSM3689242 f2_040_28L2
GSM3689243 f2_040_28L3
Relations
BioProject PRJNA529579
SRA SRP189711

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128966_f2_FPKM.txt.gz 2.1 Mb (ftp)(http) TXT
GSE128966_f2_count.txt.gz 965.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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