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| Status |
Public on Mar 30, 2019 |
| Title |
Transcriptome responses in wheat roots to colonization by the arbuscular mycorrhizal fungus Rhizophagus irregularis |
| Organism |
Triticum aestivum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The influence of arbuscular mycorrhizal (AM) colonization on the expression of genes in the roots of wheat (Triticum aestivum L.) at the transcriptome level is largely unknown. A pot experiment was established to study the responses of the transcriptome profile in the roots of wheat to colonization by the AM fungus Rhizophagus irregularis using high through-put sequencing methods. The results indicated that the expression of 11,746 genes was regulated by AM colonization, and 64.7% of them were up-regulated genes. 1106 genes were only expressed in roots colonized by AMfungi, and 108 genes were only expressed in non- mycorrhizal roots. The differentially expressed genes (DEGs) were primarily distributed on the 2B, 3B, 2A, 2D, and 5B chromosomes of wheat. The DEGs (including both up- and down- regulated) mainly located on membranes, and functioned in nucleotide binding and transferase activity during cellular protein modification and biosynthetic processes. The data revealed that AMcolonization up-regulated genes involved in the phenylpropanoid biosynthesis pathway and transcription factors which play vital roles in protecting plants from biotic or abiotic stresses. A number of key genes involved in molecular signal biosynthesis and recognition, epidermal cell colonization and arbuscule formation, carbon and nutrients exchange during AM symbiosis were found. All the ammonium transporter (AMT), iron-phytosiderophore transporter, boron, zinc, and magnesium transporter genes found in our study were up-regulated DEGs. One new AM-specific induced AMT and three new AM-specific induced nitrate transporter (NRT) genes were found in the roots of wheat colonized by AMfungi, even though a negative growth response of wheat to AM colonization occurred. The present study provided new information which is important for under- standing the mechanisms behind the development and function of the symbiosis between wheat and AM fungi.
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| Overall design |
6 samples for the two treatments, and three biological replicates for each treatment
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| Contributor(s) |
Li M, Wang R, Tian H, Gao Y |
| Citation(s) |
30251133 |
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| Submission date |
Mar 29, 2019 |
| Last update date |
Mar 31, 2019 |
| Contact name |
HUI TIAN |
| E-mail(s) |
tianh@nwsuaf.edu.cn
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| Organization name |
Northwest A&F University
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| Street address |
No.3
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| City |
Yangling |
| ZIP/Postal code |
712100 |
| Country |
China |
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| Platforms (1) |
| GPL10467 |
Illumina Genome Analyzer (Triticum aestivum) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA529884 |
| SRA |
SRP189884 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE129059_processed_data.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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