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| Status |
Public on Aug 12, 2023 |
| Title |
m6A modification of EBV transcripts |
| Organism |
human gammaherpesvirus 4 |
| Experiment type |
Other
|
| Summary |
We examined the viral epitranscriptome in EBV transformed lymphoblastoid cell lines (LcLs) and EBV-positive Burkitt's lymphoma, Akata cells, using methylated RNA immunoprecipitation followed by sequencing (MeRIP-seq). Biological replicates of ribo-RNA deleted mRNA of each cell type were prepared for MeRIP-seq followed by peak calling using the exome Peak package with settings for stringent peak calling on both strands of the genome.
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| |
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| Overall design |
We examined the viral epitranscriptome in 2 different EBV positive cell lines during latency and lytic infection.
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| |
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| Contributor(s) |
Lang F, Robertson ES |
| Citation missing |
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| |
| Submission date |
Apr 02, 2019 |
| Last update date |
Aug 12, 2023 |
| Contact name |
Fengchao Lang |
| E-mail(s) |
flang@upenn.edu
|
| Organization name |
University of Pennsylvania
|
| Street address |
3610 Hamilton Walk
|
| City |
PHILADELPHIA |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL26377 |
Illumina HiSeq 3000 (Human gammaherpesvirus 4) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA530545 |
| SRA |
SRP190167 |
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