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Series GSE12930 Query DataSets for GSE12930
Status Public on Sep 14, 2009
Title Induction of the IL-6/signal transducer and activator of transcription pathway in the lungs of mice exposed to tobacco
Organism Mus musculus
Experiment type Expression profiling by array
Summary We have examined the impact of subchronic levels of tobacoo smoke on murine lungs. We have used high density DNA microarray and analysed lung tissues from mice exposed to mainstream tobacco smoke (MTS). Our results reveal induction of inflammatory cytokine interleukin-6 (IL-6) and its antagonist suppressor of cytokine signalling (SOCS3) mRNA in smoking group. We also show that these changes are transient and are reversed completely after a period of cessation of smoking.

Keywords: Toxicology, disease state analysis, biomarkers of health effects
 
Overall design Male C57B1/CBA mice were exposed to MTS from two cigarettes daily, 5 days/week for 6 or 12 weeks. Mice were sacrificed immediately, or six weeks following the last cigarette. Left lung lobes were removed and flash frozen. Total RNA was isolated from a small part of the frozen lung and was hybridized against universal mouse reference RNA to Agilent Oligo DNA microarrays (Agilent Technologies) containing 22,000 transcripts. Microarrays were normalized using a global LOWESS approach and analyzed by MAANOVA 2.0 and SAM. Microarray results were validated by real time RT-PCR. Impact of alteration in expression of select genes was further validated by analysing their total protein levels in lung tissue homogenates.
 
Contributor(s) Halappanavar S, Russell M, Stampfli M, Williams A, Yauk CL
Citation(s) 19698101
Submission date Sep 25, 2008
Last update date Dec 06, 2012
Contact name Andrew Williams
Organization name Health Canada
Street address 50 Columbine
City Ottawa
State/province ON
ZIP/Postal code K1A OK9
Country Canada
 
Platforms (1)
GPL2881 Agilent-013326 Mouse Oligo Microarray (V2) G4121B (Feature Number version)
Samples (39)
GSM324340 6 week smoke-break sham_109
GSM324341 12 week smoke_111
GSM324342 6 week smoke_133
Relations
BioProject PRJNA110851

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Supplementary file Size Download File type/resource
GSE12930_RAW.tar 152.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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