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Series GSE129347 Query DataSets for GSE129347
Status Public on Apr 04, 2020
Title Anti-inflammatory effects of HDL in macrophages predominate over pro-inflammatory effects in atherosclerotic plaques
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary HDL infusion reduces atherosclerosis in animal models and is being evaluated as a treatment in humans. While some studies have shown anti-inflammatory effects of HDL in macrophages, others have reported pro-inflammatory effects and there is no consensus on underlying mechanisms. Transcriptional profiling reveals that HDL-mediated cholesterol efflux leads to both pro- and anti-inflammatory effects in LPS-stimulated macrophages. While early anti-inflammatory effects reflect reduced TLR4 levels, late anti-inflammatory effects are due to reduced interferon receptor signaling. Pro-inflammatory effects occur late and are ER stress responses mediated by IRE1a/ASK1/p38 MAPK signaling under conditions of marked cholesterol depletion. rHDL infusions in hypercholesterolemic atherosclerotic mice produced moderate anti-inflammatory effects in lesional macrophages without pro-inflammatory gene expression changes suggesting a beneficial therapeutic effect of HDL in vivo.
 
Overall design mRNA profiling of BMDM treated with rHDL
 
Contributor(s) Thomas DG, Tall A
Citation(s) 31578081
Submission date Apr 04, 2019
Last update date Apr 10, 2020
Contact name David G Thomas
Organization name Columbia University
Department Medicine
Street address 630 W 168th St P&S 8-401
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (18)
GSM3711410 Notr_Ctrl-1
GSM3711411 Notr_Ctrl-2
GSM3711412 Notr_Ctrl-3
Relations
BioProject PRJNA530992
SRA SRP190876

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129347_ctrl_lps_counts.txt.gz 2.2 Mb (ftp)(http) TXT
GSE129347_hdl_counts.txt.gz 2.3 Mb (ftp)(http) TXT
GSE129347_hdl_effect_1-5F.csv.gz 107.2 Kb (ftp)(http) CSV
GSE129347_hdl_effect_inCL_1-5F.csv.gz 3.5 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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