|
| Status |
Public on Sep 25, 2020 |
| Title |
RNA-seq for MDCKII 3D and 2D epithelial morphogenesis. |
| Organism |
Canis lupus familiaris |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We performed time-course RNA-seq experiments for MDCKII 3D cell culture, and included seeding day0 cells and over-confluent 2D cells. To study how intracellular trafficking affects transcriptome changes, we also profiled trancriptome of DENND5A and AVL9 KD MDCKII cells by RNA-seq.
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| |
|
| Overall design |
Examination of mRNA expression during epithelial morphogenesis in MDCKII cells.
|
| |
|
| Contributor(s) |
Zhao S, Wang T |
| Citation(s) |
33089114 |
| |
| Submission date |
Apr 15, 2019 |
| Last update date |
Oct 27, 2020 |
| Contact name |
Shaying Zhao |
| E-mail(s) |
szhao@uga.edu
|
| Organization name |
University of Georgia
|
| Lab |
Shaying Zhao
|
| Street address |
B304B Life Sciences, 120 Green Street
|
| City |
ATHENS |
| State/province |
GA |
| ZIP/Postal code |
30602 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL20988 |
Illumina HiSeq 2500 (Canis lupus familiaris) |
| GPL21400 |
Illumina NextSeq 500 (Canis lupus familiaris) |
|
| Samples (29)
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| This SubSeries is part of SuperSeries: |
| GSE129824 |
ATAC-seq and RNA-seq for MDCKII 3D and 2D epithelial morphogenesis |
|
| Relations |
| BioProject |
PRJNA532909 |
| SRA |
SRP192602 |
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