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Series GSE129963 Query DataSets for GSE129963
Status Public on Jul 08, 2020
Title ChIP-seq profiling of macropahge response to LPS
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To analyze epigenetic profiles of lncRAN loci, we perfomed ChIP-seq of H3K4me3 and PU.1 in bone marrow-derived macrophages.
 
Overall design ChIP-seq profiling of LPS response in histone modifications in macrophages.
 
Contributor(s) Manabe I, Nakayama Y
Citation(s) 32513690
Submission date Apr 17, 2019
Last update date Jul 08, 2020
Contact name Ichiro Manabe
E-mail(s) manabe-tky@umin.ac.jp
Organization name Chiba University
Street address 1-8-1 Inohana, Chuo
City Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (4)
GSM3728689 H3K4me3_LPS_0h
GSM3728690 H3K4me3_LPS_4h
GSM3728691 H3K4me3_LPS_12h
This SubSeries is part of SuperSeries:
GSE130056 Analysis of long noncoding RNAs in macrophages
Relations
BioProject PRJNA533330
SRA SRP192891

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129963_RAW.tar 972.3 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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