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Series GSE130504 Query DataSets for GSE130504
Status Public on Nov 10, 2019
Title Neogenin-1 distinguishes between myeloid-biased and balanced Hoxb5+ mouse long-term hematopoietic stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Hematopoietic stem cells (HSCs) self-renew and generate all blood cells. Recent studies with single-cell transplants and lineage tracing suggest that adult HSCs are diverse in their reconstitution and lineage potentials. However, prospective isolation of these subpopulations has remained challenging. Here, we identify Neogenin-1 (NEO1) as a unique surface marker on a fraction of mouse HSCs labeled with Hoxb5, a specific reporter of long-term HSCs (LT-HSCs). We show that NEO1+Hoxb5+ LT-HSCs expand with age and respond to myeloablative stress in young mice, while NEO1–Hoxb5+ LT-HSCs exhibit no significant change in number. Furthermore, NEO1+Hoxb5+ LT-HSCs are more often in the G2/S cell cycle phase compared to NEO1–Hoxb5+ LT-HSCs in both young and old bone marrow. Upon serial transplantation, NEO1+Hoxb5+ LT-HSCs exhibit myeloid-biased differentiation and reduced reconstitution, while NEO1–Hoxb5+ LT-HSCs are lineage-balanced and stably reconstitute recipients. Gene expression analysis reveals erythroid and myeloid priming in the NEO1+ fraction and association of quiescence and self-renewal-related transcription factors with NEO1− LT-HSCs. Finally, transplanted NEO1+Hoxb5+ LT-HSCs rarely generate NEO1–Hoxb5+ LT-HSCs, while NEO1–Hoxb5+ LT-HSCs repopulate both LT-HSC fractions. This supports a model in which dormant, balanced, NEO1–Hoxb5+ LT-HSCs can hierarchically precede active, myeloid-biased NEO1+Hoxb5+ LT-HSCs.
 
Overall design Bulk RNA-sequencing profiles of NEO1+Hoxb5+ (n = 5) and NEO1–Hoxb5+ (n = 5) LT-HSCs from the bone marrow of 2- to 3-month-old Hoxb5­-mCherry mice.
 
Contributor(s) Gulati GS, Szade K, Sinha R, Weissman IL
Citation(s) 31754028
Submission date Apr 30, 2019
Last update date Feb 09, 2020
Contact name Gunsagar Singh Gulati
E-mail(s) gunsagargulati@stanford.edu
Organization name Stanford University
Department Institute for Stem Cell Biology and Regenerative Medicine
Lab Irving Weissman
Street address 265 Campus Drive
City Palo Alto
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (10)
GSM3741501 NEO1+Hoxb5+ LT-HSCs [Sample1]
GSM3741502 NEO1+Hoxb5+ LT-HSCs [Sample2]
GSM3741503 NEO1+Hoxb5+ LT-HSCs [Sample3]
Relations
BioProject PRJNA540492
SRA SRP194273

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130504_Neo1_plus_vs_minus_Counts_table.txt.gz 368.0 Kb (ftp)(http) TXT
GSE130504_Neo1_plus_vs_minus_DESeq2_sizefactor_and_log_normalized_table.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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