|
| Status |
Public on Jan 01, 2020 |
| Title |
Genetic dissection of gene silencing mediated by H3K27 methylation |
| Organism |
Fusarium graminearum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We are intereted in changes in transcriptome in putative polycomb mutants generated by exposure to UV light. We included polycomb mutants made by reverse genetics and other WT strains with different genetic backgrounds used as parents for bulk segregant analysis.
|
| |
|
| Overall design |
RNA-seq for 68 samples, each from a different strain of Fusarium graminearum.
|
| |
|
| Contributor(s) |
Connolly LR, Chang XL, Pham P, Gonçalves RD, Pierce BR, Fargo CM, Josephson BR, Bango Z, Esposito M, Markillie LM, Orr G, Smith KM, Freitag M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 10, 2019 |
| Last update date |
Jan 01, 2020 |
| Contact name |
Kristina M Smith |
| E-mail(s) |
smitkris@science.oregonstate.edu
|
| Organization name |
Oregon State University
|
| Department |
Biochemisty and Biophysics
|
| Lab |
Freitag
|
| Street address |
ALS2011
|
| City |
Corvallis |
| State/province |
OR |
| ZIP/Postal code |
97331 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL26650 |
AB 5500xl Genetic Analyzer (Fusarium graminearum) |
| GPL26651 |
Illumina HiSeq 3000 (Fusarium graminearum) |
|
| Samples (68)
|
|
| Relations |
| BioProject |
PRJNA542356 |
| SRA |
SRP197596 |
Less...
More...