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Series GSE131834 Query DataSets for GSE131834
Status Public on Jun 02, 2019
Title Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Liver myeloid leukocytes and their bone marrow precursors adapt a common and functionally relevant inflammatory signature during NAFLD progression.
 
Overall design leukocytes from liver and bone marrow were isolated from ND and WD fed mice for single cell RNA sequencing analysis
 
Contributor(s) Krenkel O, Hundertmark J, Abdallah AT, Kohlhepp M, Puengel T, Roth T, Branco DP, Mossanen JC, Luedde T, Trautwein C, Costa IG, Tacke F
Citation(s) 31076404
Submission date May 28, 2019
Last update date Jun 03, 2019
Contact name Ali T Abdallah
E-mail(s) bioinformatics.ali.abdallah@gmail.com
Organization name University of Cologne
Department Medical Faculty
Lab CECAD
Street address Joseph Stelzmann Str. 26
City Cologne
ZIP/Postal code 50931
Country Germany
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM3820538 ND liver 1
GSM3820539 ND liver 2
GSM3820540 WD liver 1
Relations
BioProject PRJNA545094
SRA SRP199637

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131834_BM_ND_WD_WT16.txt.gz 30.7 Mb (ftp)(http) TXT
GSE131834_Liver_ND_WD_WT16.txt.gz 21.9 Mb (ftp)(http) TXT
GSE131834_annotation_bonemarrow.csv.gz 58.7 Kb (ftp)(http) CSV
GSE131834_annotation_liver.csv.gz 58.8 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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