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Series GSE131883 Query DataSets for GSE131883
Status Public on Apr 13, 2020
Title Predominant Requirement of Mitochondrial Transcriptional Factor A in Tissue-resident Regulatory T cell Maintenance and Function
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Regulatory T cells (Tregs) are pivotal for immune suppression. Cellular metabolism is important for Treg homeostasis and function. However, the exact role of mitochondrial respiration in Tregs remains elusive. Mitochondrial transcription factor A (Tfam) is essential for mitochondrial respiration and controls mitochondrial DNA replication, transcription and packaging. Here we show that genetic ablation of Tfam in Tregs impairs Treg maintenance in non-lymphoid tissues at the steady state and in tumor. Tfam-deficient Tregs have reduced proliferation and Foxp3 expression upon glucose deprivation in vitro. Tfam deficiency preferentially affects gene activation in Tregs through regulation of DNA methylation. Tfam-deficient Tregs have enhanced methylation at TSDR of Foxp3 locus. Deletion of Tfam in Tregs affects Treg homing and maintenance, resulting in tissue inflammation in colitis, but enhances tumor rejection. Thus, our work reveals a critical role for Tfam-mediated Treg respiration in regulation of inflammation and anti-tumor immunity.
 
Overall design RNA-seq (3 replicates) and ATAC-seq (2 replicates) analysis of spleen/lymph node regulatory T cells from Tfam cKO and control female mice.
 
Contributor(s) Zhou L, Fu Z, Dean J, Bostick J
Citation(s) 31269437
Submission date May 29, 2019
Last update date Apr 13, 2020
Contact name Liang Zhou
Organization name University of Florida
Department IDI
Lab V3-207
Street address 2015 SW 16th Ave
City Gainesville
State/province FL
ZIP/Postal code 32608
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (10)
GSM3823945 RNA_Treg_Tfam_Ctrl_R1
GSM3823946 RNA_Treg_Tfam_Ctrl_R2
GSM3823947 RNA_Treg_Tfam_Ctrl_R3
Relations
BioProject PRJNA545234
SRA SRP199726

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131883_RAW.tar 1.0 Gb (http)(custom) TAR (of BEDGRAPH)
GSE131883_RNA_Tfam_HTseq_counts.txt.gz 227.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data are available on Series record
Processed data provided as supplementary file
Raw data are available in SRA

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