|
| Status |
Public on Jun 01, 2020 |
| Title |
RNA sequencing data of aging zebrafish brain progenitor cells |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Our aim in this study was to investigate the gene expression changes through pre-adult to adult, and adult to old age, in zebrafish brains. We isolated the neuronal cells and performed RNA sequencing in 3 months old, 6-8.5 months old, and 26-31 months old zebrafish brains. The cells were enriched in progenitor cell markers, which diminished throughout the aging process.
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| |
|
| Overall design |
Transcriptome profiling of brain progenitor cells from 3, 8, and 30 mo-old zebrafish
|
| |
|
| Contributor(s) |
Arslan-Ergul A, Burhan OP, Sarac A |
| Citation(s) |
32629311 |
| |
| Submission date |
Jun 27, 2019 |
| Last update date |
Jan 24, 2021 |
| Contact name |
Ayca Arslan Ergul |
| E-mail(s) |
aycaergul@gmail.com
|
| Organization name |
Bilkent University
|
| Department |
UNAM
|
| Street address |
Bilkent Üniversitesi UNAM
|
| City |
ANKARA |
| State/province |
ÇANKAYA |
| ZIP/Postal code |
06800 |
| Country |
Turkey |
| |
|
| Platforms (1) |
| GPL18413 |
Illumina HiSeq 2500 (Danio rerio) |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA551453 |
| SRA |
SRP212204 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE133436_RAW.tar |
8.5 Mb |
(http)(custom) |
TAR (of FPKM_TRACKING) |
| GSE133436_RNAmidyoung_abundances.cxb.gz |
6.8 Mb |
(ftp)(http) |
CXB |
| GSE133436_RNAmidyoung_genes.fpkm_tracking.gz |
1.3 Mb |
(ftp)(http) |
FPKM_TRACKING |
| GSE133436_RNAmidyoung_merged.gtf.gz |
7.6 Mb |
(ftp)(http) |
GTF |
| GSE133436_RNAoldmid_abundances.cxb.gz |
6.7 Mb |
(ftp)(http) |
CXB |
| GSE133436_RNAoldmid_genes.fpkm_tracking.gz |
1.3 Mb |
(ftp)(http) |
FPKM_TRACKING |
| GSE133436_RNAoldmid_merged.gtf.gz |
7.6 Mb |
(ftp)(http) |
GTF |
| GSE133436_RNAoldyoung_abundances.cxb.gz |
6.7 Mb |
(ftp)(http) |
CXB |
| GSE133436_RNAoldyoung_genes.fpkm_tracking.gz |
1.3 Mb |
(ftp)(http) |
FPKM_TRACKING |
| GSE133436_RNAoldyoung_merged.gtf.gz |
7.6 Mb |
(ftp)(http) |
GTF |
| GSE133436_gene_exp_miDYoung_.diff.gz |
1.1 Mb |
(ftp)(http) |
DIFF |
| GSE133436_gene_exp_oldMid_.diff.gz |
1.1 Mb |
(ftp)(http) |
DIFF |
| GSE133436_gene_exp_oldYoung_.diff.gz |
1.0 Mb |
(ftp)(http) |
DIFF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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