GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE134175 Query DataSets for GSE134175
Status Public on Dec 05, 2019
Title Single cell ATAC sequencing profile of quiescent mesenchymal progenitors
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary After tissue injury mesenchymal progenitor subsets undergo a transient proliferative expansion, morphological transition and migration from their perivascular niche. Some of these subsets contribute enduring populations to connective tissue structures adjacent to muscle. To gain insights into gene accessibility to complement the single cell RNA seq expression data previously obtained and to uncover the lineage potential of MPs in this context, tdTomato positive cells were profiled by single cell ATAC sequencing.
Overall design Single cell ATAC-seq analyses of enriched quiescent mesenchymal progenitors from skeletal muscle.
Contributor(s) Scott RW, Underhill TM
Citation(s) 31809738
Submission date Jul 11, 2019
Last update date Feb 19, 2020
Contact name Tully Michael Underhill
Phone 604-822-5833
Organization name University of British Columbia
Department Biomedical Research Centre
Street address 2222 Health Sciences Mall
City Vancouver
State/province British Columbia
ZIP/Postal code V6T 1Z3
Country Canada
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (1)
GSM3938397 Single cell ATAC-seq tdTomato MPs quiescent
This SubSeries is part of SuperSeries:
GSE110038 Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration
BioProject PRJNA554142
SRA SRP214326

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134175_RAW.tar 140.2 Mb (http)(custom) TAR (of BED, MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap