NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE134437 Query DataSets for GSE134437
Status Public on Feb 29, 2020
Title Inflammation favors the emergence of ETV6-RUNX1-positive pre-leukemic cells in a model of mesenchymal niche
Organism Mus musculus
Experiment type Expression profiling by array
Summary ETV6-RUNX1 (E/R) fusion gene, arising in utero from t(12;21), is the most frequent alteration in childhood acute lymphoblastic leukemia (ALL). Despite this, E/R is insufficient to overt disease since it generates a clinically silent pre-leukemic clone which contributes to hematopoiesis but fail to out-compete normal hematopoietic progenitors. Conversely, pre-leukemic cells show increased susceptibility to malignant transformation following additional genetic insults. Infections/inflammation are the most accredited triggers for mutations accumulation and progression in E/R+ pre-leukemic cells. However, how E/R and inflammation interact in promoting leukemia, both directly or through other cellular components in the bone marrow (BM) niche, is still poorly understood. Here, we demonstrate that IL6/TNFα/ILβ pro-inflammatory cytokines cooperate with BM-MSC in promoting the emergence of E/R+ murine pro-B cells over their normal counterparts by differentially affecting their proliferation, survival and migration. Very interesting, E/R-expressing human CD34+IL7R+ progenitors, a candidate population for pre-leukemic initiation during development, were preserved within the inflamed niche compared to their normal counterparts. Finally, the extent of DNA damage and activation-induced cytidine deaminase (AID) expression increase within the inflamed niche in both cell type, potentially leading to transformation in the apoptosis-resistant pre-leukemic clone. Overall, our data provide new mechanistic insights in childhood ALL pathogenesis.
 
Overall design Gene expression was measured on GeneChip Mouse 2.0 platform of cells derived from BaF3 cells with TEL_AML1 fusion trascript and from wild type BaF3 cells.
 
Contributor(s) Bresolin S, Palmi C
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 17, 2019
Last update date Mar 02, 2020
Contact name silvia bresolin
E-mail(s) silvia.bresolin@unipd.it
Phone +390498215487
Organization name università di padova
Department department of women's and children's health
Lab SSD ematologia-clinica sperimentale
Street address via giustiniani 3
City padova
State/province padova
ZIP/Postal code 35128
Country Italy
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (8)
GSM3946596 TEL_AML_01
GSM3946597 TEL_AML_05
GSM3946598 TEL_AML_09
Relations
BioProject PRJNA558759

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134437_RAW.tar 26.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap