NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE134574 Query DataSets for GSE134574
Status Public on Jul 20, 2019
Title Transcriptomic analysis of gene-knockouts in M. tuberuclosis H37Rv
Organism Mycobacterium tuberculosis
Experiment type Expression profiling by high throughput sequencing
Summary Analysis of changes in gene expression in 9 gene-knockout strains.
 
Overall design RNA-seq of knockout strains and parental strain (H37Rv) for comparison, grown in-vitro (7H9 medium).

contributor: FLUTE project (NIH U19 AI107774)

SRA Study accession: SRP174545, BioProject accession: PRJNA511742
 
Contributor(s) Ioerger TR
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA511742
Submission date Jul 19, 2019
Last update date Jul 22, 2019
Contact name Thomas R Ioerger
E-mail(s) ioerger@cs.tamu.edu
Organization name Texas A&M University
Department Department of Computer Science
Street address 3112 TAMUS
City College Station
State/province TX
ZIP/Postal code 77843-3112
Country USA
 
Platforms (1)
GPL17879 Illumina HiSeq 2500 (Mycobacterium tuberculosis)
Samples (30)
GSM3956318 RNA-Seq of knockout of Rv0307c rep1
GSM3956319 RNA-Seq of knockout of Rv0307c rep2
GSM3956320 RNA-Seq of knockout of Rv0307c rep3
Relations
SRA SRP174545

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134574_RAW.tar 1.3 Mb (http)(custom) TAR (of TXT)
GSE134574_rv0307c_DESeq2.txt.gz 194.5 Kb (ftp)(http) TXT
GSE134574_rv0950c_DESeq2.txt.gz 219.9 Kb (ftp)(http) TXT
GSE134574_rv1096_DESeq2.txt.gz 215.4 Kb (ftp)(http) TXT
GSE134574_rv1432_DESeq2.txt.gz 224.6 Kb (ftp)(http) TXT
GSE134574_rv1565c_DESeq2.txt.gz 223.2 Kb (ftp)(http) TXT
GSE134574_rv2680_DESeq2.txt.gz 214.6 Kb (ftp)(http) TXT
GSE134574_rv3484_DESeq2.txt.gz 203.2 Kb (ftp)(http) TXT
GSE134574_rv3684_DESeq2.txt.gz 197.6 Kb (ftp)(http) TXT
GSE134574_rv3916c_DESeq2.txt.gz 208.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap