GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE134574
Query DataSets for GSE134574
Status
Public on Jul 20, 2019
Title
Transcriptomic analysis of gene-knockouts in M. tuberuclosis H37Rv
Organism
Mycobacterium tuberculosis
Experiment type
Expression profiling by high throughput sequencing
Summary
Analysis of changes in gene expression in 9 gene-knockout strains.
Overall design
RNA-seq of knockout strains and parental strain (H37Rv) for comparison, grown in-vitro (7H9 medium).
contributor: FLUTE project (NIH U19 AI107774)
SRA Study accession: SRP174545, BioProject accession: PRJNA511742
Contributor(s)
Ioerger TR
Citation missing
Has this study been published? Please
login
to update or
notify GEO
.
BioProject
PRJNA511742
Submission date
Jul 19, 2019
Last update date
Jul 22, 2019
Contact name
Thomas R Ioerger
E-mail(s)
ioerger@cs.tamu.edu
Organization name
Texas A&M University
Department
Department of Computer Science
Street address
3112 TAMUS
City
College Station
State/province
TX
ZIP/Postal code
77843-3112
Country
USA
Platforms (1)
GPL17879
Illumina HiSeq 2500 (Mycobacterium tuberculosis)
Samples (30)
Less...
More...
GSM3956318
RNA-Seq of knockout of Rv0307c rep1
GSM3956319
RNA-Seq of knockout of Rv0307c rep2
GSM3956320
RNA-Seq of knockout of Rv0307c rep3
GSM3956321
RNA-Seq of knockout of Rv0950c rep1
GSM3956322
RNA-Seq of knockout of Rv0950c rep2
GSM3956323
RNA-Seq of knockout of Rv0950c rep3
GSM3956324
RNA-Seq of knockout of Rv1096 rep1
GSM3956325
RNA-Seq of knockout of Rv1096 rep2
GSM3956326
RNA-Seq of knockout of Rv1096 rep3
GSM3956327
RNA-Seq of knockout of Rv1432 rep1
GSM3956328
RNA-Seq of knockout of Rv1432 rep2
GSM3956329
RNA-Seq of knockout of Rv1432 rep3
GSM3956330
RNA-Seq of knockout of Rv1565c rep1
GSM3956331
RNA-Seq of knockout of Rv1565c rep2
GSM3956332
RNA-Seq of knockout of Rv1565c rep3
GSM3956333
RNA-Seq of knockout of Rv2680 rep1
GSM3956334
RNA-Seq of knockout of Rv2680 rep2
GSM3956335
RNA-Seq of knockout of Rv2680 rep3
GSM3956336
RNA-Seq of knockout of Rv3484 rep1
GSM3956337
RNA-Seq of knockout of Rv3484 rep2
GSM3956338
RNA-Seq of knockout of Rv3484 rep3
GSM3956339
RNA-Seq of knockout of Rv3684 rep1
GSM3956340
RNA-Seq of knockout of Rv3684 rep2
GSM3956341
RNA-Seq of knockout of Rv3684 rep3
GSM3956342
RNA-Seq of knockout of Rv3916c rep1
GSM3956343
RNA-Seq of knockout of Rv3916c rep2
GSM3956344
RNA-Seq of knockout of Rv3916c rep3
GSM3956345
RNA-Seq of parental strain H37Rv rep1
GSM3956346
RNA-Seq of parental strain H37Rv rep2
GSM3956347
RNA-Seq of parental strain H37Rv rep3
Relations
SRA
SRP174545
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE134574_RAW.tar
1.3 Mb
(http)
(custom)
TAR (of TXT)
GSE134574_rv0307c_DESeq2.txt.gz
194.5 Kb
(ftp)
(http)
TXT
GSE134574_rv0950c_DESeq2.txt.gz
219.9 Kb
(ftp)
(http)
TXT
GSE134574_rv1096_DESeq2.txt.gz
215.4 Kb
(ftp)
(http)
TXT
GSE134574_rv1432_DESeq2.txt.gz
224.6 Kb
(ftp)
(http)
TXT
GSE134574_rv1565c_DESeq2.txt.gz
223.2 Kb
(ftp)
(http)
TXT
GSE134574_rv2680_DESeq2.txt.gz
214.6 Kb
(ftp)
(http)
TXT
GSE134574_rv3484_DESeq2.txt.gz
203.2 Kb
(ftp)
(http)
TXT
GSE134574_rv3684_DESeq2.txt.gz
197.6 Kb
(ftp)
(http)
TXT
GSE134574_rv3916c_DESeq2.txt.gz
208.1 Kb
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|